Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6p12
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    94   2e-20
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    29   0.53 
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   2.8  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    26   5.0  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    25   6.5  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.7  

>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 41/98 (41%), Positives = 66/98 (67%)
 Frame = +2

Query: 311 ERRPYLASECNDLPQAEKWRLQIVREIAKKVAQIQNAGLGEFRIRDLNDEINKLMREKRH 490
           E+RP        +P  EK R  +V++I++K+++IQ+A L E++IRDLND IN+LMREK  
Sbjct: 14  EKRPKDIKSIKSVPICEKHRASVVKDISRKISRIQSATLPEYQIRDLNDAINRLMREKHE 73

Query: 491 WEVQIKSLGGPDHARVGPKMLDQDGKEVPGNRGYKYFG 604
           WEVQI+ LGG ++     K+ + +G+++     Y+Y+G
Sbjct: 74  WEVQIRDLGGINYLYNKAKLFEDEGEQISDIDDYRYYG 111


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 242 AEKAMTTLARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAKKV 403
           A  A+TTL +  AAQ  +A    E++  L S C +L +A      +  E+A  +
Sbjct: 319 ASHALTTLNKAAAAQAAKAANNSEKQA-LDSACKELREAVLKNTSVPHELANSI 371


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 47  NFFKMFSLMELKFIYQRIYC 106
           +F K F+L +L F +QR+YC
Sbjct: 266 SFEKEFALADLAFRHQRVYC 285


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 425 LGEFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARVGP 544
           LG++ I  +  E+ + + +K  W+ +       DH+R GP
Sbjct: 367 LGKYSIGCMFRELEEPLLKKWRWKKENLEFAALDHSRAGP 406


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -2

Query: 559 LVQHFRTDSSMIGTAQRFNLNLPMSLLPHKFINFVVKIANPELSETGILYLCHFFRNF 386
           +  ++ T  S+    + F    P  L  +  ++F+V   N     +G   LCHF+ NF
Sbjct: 221 MTDYYETLPSLWNVTRDFIHQNPQYLAQNNSLDFIV---NDHQGLSGDYNLCHFWSNF 275


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 184 NGLDPKNRNCKYNLNHGQKRRESNDNTSTLACGTSSGSGRPARTTSVSCIRM**FTTSRE 363
           N +  K +N K+  N  +  R +    + L   +S    RPA +TSV        + +R 
Sbjct: 136 NRVQKKIKN-KHGKNSSKSSRAAQSAAAELISSSSITGARPANSTSVPNAVNTEISAARA 194

Query: 364 VEVTDCQRNCEKSGTD 411
            E ++  RN  K+  D
Sbjct: 195 TE-SEASRNQTKASRD 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,617
Number of Sequences: 5004
Number of extensions: 50670
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)