Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6p12
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0517 - 23599154-23600089 148 3e-36
06_01_0679 - 4972996-4973010,4973818-4973936,4974038-4974128,497... 34 0.077
10_06_0166 + 11392172-11392715,11392796-11392803 30 1.6
08_02_0009 + 11216532-11218687,11220727-11225998 29 2.2
05_05_0266 - 23694466-23696787,23696885-23697187 29 2.2
07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587 29 3.8
01_07_0326 - 42750189-42750965 29 3.8
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 28 5.0
11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103 28 6.7
01_06_1598 + 38535077-38535368,38536381-38536463,38536575-385366... 27 8.8
>02_04_0517 - 23599154-23600089
Length = 311
Score = 148 bits (359), Expect = 3e-36
Identities = 78/134 (58%), Positives = 92/134 (68%), Gaps = 8/134 (5%)
Frame = +2
Query: 230 MARNAEKAMTTLARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAKKVAQ 409
MARN EKA + L R+ + +E RERRPYLASEC DL AE+WR +I+REI KVA+
Sbjct: 1 MARNEEKAQSMLNRFITMKQEEKRKPRERRPYLASECRDLADAERWRSEILREIGAKVAE 60
Query: 410 IQNAGLGEFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARV--GPKMLDQDGKEV--- 574
IQN GLGE R+RDLNDEINKL+RE+ HWE +I LGG DH+R P M D DG V
Sbjct: 61 IQNEGLGEHRLRDLNDEINKLLRERGHWERRIVELGGRDHSRSSNAPLMTDLDGNIVAIP 120
Query: 575 -PGNR--GYKYFGA 607
P R GY+YFGA
Sbjct: 121 NPSGRGPGYRYFGA 134
>06_01_0679 -
4972996-4973010,4973818-4973936,4974038-4974128,
4974193-4974435
Length = 155
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 239 NAEKAMTTLARWRAAQVQEAGGQRERRPYL 328
N + +TT AR R A+ QEAGG R RRP L
Sbjct: 22 NRTRGITTGARRRGARRQEAGGARRRRPAL 51
>10_06_0166 + 11392172-11392715,11392796-11392803
Length = 183
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -3
Query: 429 PRPAFCICATFFAISLTICNLHFSACGKSLHSDARYGRRSRWPPAS*TCAARQRASVVIA 250
P P + + L + FSA H A + RR PPA+ C AR+R ++A
Sbjct: 2 PHPNIAASCSPSCLLLAVAVTFFSATASISHGAAHHARRVPAPPAA--CVARER-DALLA 58
Query: 249 F 247
F
Sbjct: 59 F 59
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 523 GTAQRFNLNLPMSLLPHKFINFVVKIANPELSETGILYLCHFFRNF 386
G +RFN N ++ L H +N + + N + + L ++F+NF
Sbjct: 1983 GHGERFNHNFRITELQHGLLNLLWQTKNKKEKAHALNSLAYYFKNF 2028
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 347 LPQAEKWRLQIVREIAKKVAQIQNAGLGEFRIRDL-NDEI 463
+P A + +V E+AK Q+ L EFR R+L ND I
Sbjct: 701 MPAAHSRAINVVPEVAKSERQMDEEYLNEFRSRNLGNDAI 740
>07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587
Length = 191
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 263 LARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAK 397
LARWR + + G+R RR LA + P W + ++ +
Sbjct: 36 LARWRWRRQGSSAGRRSRRVGLAERGSGAPARPVWLCAVAAKVGR 80
>01_07_0326 - 42750189-42750965
Length = 258
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 347 LPQAEKWRLQIVREIAKKVAQIQNAGLGEFRIRDLNDE 460
+P A + +V E+AK Q+ L EFR R+L +
Sbjct: 124 MPAAHSRAINVVPEVAKSERQMDEEYLNEFRSRNLGSD 161
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 431 EFRIRDLNDEINKLMREKRHWEVQIKS 511
E ++RDL +++L+REK H V ++S
Sbjct: 307 ESKVRDLEARVDELLREKEHIGVLLRS 333
>11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103
Length = 404
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 360 RSGGYRLSEKLRKKWHRYRMPVSESSGFAILTTKL 464
+S R +L+++W R + PVSE +G TK+
Sbjct: 204 KSNRMRNRNQLKQRWERIKKPVSEFNGCYARITKI 238
>01_06_1598 +
38535077-38535368,38536381-38536463,38536575-38536643,
38537127-38537182,38537275-38537354,38537496-38537578,
38537682-38537759,38538133-38538201,38538366-38538434,
38538520-38538566,38538656-38538746,38538839-38538892
Length = 356
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 446 DLNDEINKLMREKRHWEVQIKSLGGPDHARVGPKMLDQDGKEV 574
D N + K + K WE+Q + P R G +++ +DG EV
Sbjct: 272 DSNSFVVKTLDRKTLWEMQTPQVMRPSLLRDGFELVKRDGLEV 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,129,260
Number of Sequences: 37544
Number of extensions: 323534
Number of successful extensions: 1030
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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