Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6p12
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-2|CAA96652.1|  267|Caenorhabditis elegans Hypothetical pr...   148   4e-36
U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AC006603-1|AAF39749.1|  772|Caenorhabditis elegans Hypothetical ...    28   6.0  
U64605-4|AAF98600.1|  249|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z72510-2|CAA96652.1|  267|Caenorhabditis elegans Hypothetical
           protein F53B7.3 protein.
          Length = 267

 Score =  148 bits (358), Expect = 4e-36
 Identities = 67/126 (53%), Positives = 90/126 (71%)
 Frame = +2

Query: 230 MARNAEKAMTTLARWRAAQVQEAGGQRERRPYLASECNDLPQAEKWRLQIVREIAKKVAQ 409
           MARNAEKAMT LARWR  + +E  G   RRP+   +C +L  AE++R +IVR+ +KK+  
Sbjct: 1   MARNAEKAMTALARWRRMKEEEERGPIARRPHDVKDCRNLSDAERFRREIVRDASKKITA 60

Query: 410 IQNAGLGEFRIRDLNDEINKLMREKRHWEVQIKSLGGPDHARVGPKMLDQDGKEVPGNRG 589
           IQN GLGEF++RDLNDE+N+L++ K  WE +I+ LGG D+ +   K LD  G+E   +RG
Sbjct: 61  IQNPGLGEFKLRDLNDEVNRLIKLKHAWEQRIRELGGTDYRKYAQKELDAIGRETGNSRG 120

Query: 590 YKYFGA 607
           YKYFGA
Sbjct: 121 YKYFGA 126


>U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical
           protein F53F10.3 protein.
          Length = 133

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 600 KYLYPRLPGTSFPSWSNILGP 538
           K++YP LP  + P+W++  GP
Sbjct: 17  KFVYPVLPAFAKPAWNHAAGP 37


>AC006603-1|AAF39749.1|  772|Caenorhabditis elegans Hypothetical
           protein B0524.4 protein.
          Length = 772

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 535 SSMIGTAQRFNLNLPMSLLPHKFIN 461
           SS+IGTA R   N+ M+++ HK +N
Sbjct: 555 SSVIGTASRSVSNMQMAIVEHKRLN 579


>U64605-4|AAF98600.1|  249|Caenorhabditis elegans Hypothetical
           protein C05D9.7 protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 417 FCICATFFAISLTICNLHFSACGKSLHSDARYGR 316
           +C+  TF ++S+ +C + F  C  S+    RY R
Sbjct: 197 WCLSLTFLSVSVYVCRVAFH-CTMSIADQVRYKR 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,249
Number of Sequences: 27780
Number of extensions: 294513
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)