Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6p11
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC006677-3|AAF39952.2|  298|Caenorhabditis elegans Serpentine re...    27   8.5  

>AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical
           protein Y2H9A.2 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = +2

Query: 284 PCWVYFITINLSSVSVRIFIFKINVIFRF*NVDFVVFLFRSWSFRFLD-WISFVNYCLIY 460
           PC  + +   L S   R +I   + + R   V  V+ +     F+ L  W SF    +I 
Sbjct: 97  PCITHSVWSLLLSFGYRYYILHYSALTRLKLVKIVLLILIPSLFQGLTFWTSFAPLEIIL 156

Query: 461 CLRYITIIAYNVRSVFNC*L*INDVVTVF*ANVYIFNVLVSIMNIYILLY 610
            L       YN  +       I D+ T + A   +FN+ + I  IYI ++
Sbjct: 157 PLAKKWFPQYNFEAETGVLTGIVDI-THWAATYAVFNICLPIFPIYIAIF 205


>AC006677-3|AAF39952.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein28 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 284 PCWVYFITINLSSVSVRIFIFKINVIFRF*NVD----FVVFLFRSWSFRFL 424
           P W   I  N  +V  R FI+  ++IF     +    F+++  +SWSF+F+
Sbjct: 108 PLWYTHIFSNSKTVFYRNFIWIFSIIFCITLYEFFKCFLLYAPKSWSFQFV 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,189,201
Number of Sequences: 27780
Number of extensions: 237613
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)