Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6p11
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.3  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 425 DWISFVNYCLIYCLRYITIIAYNVRSV 505
           +W+  ++ CL Y    I  I YN+ S+
Sbjct: 307 EWLYILSGCLYYFSTTINPILYNLMSI 333


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 595 YIHY*NKYVKNVHVRLKHSNYVVN 524
           Y +Y N    N + +L + NY++N
Sbjct: 330 YNNYNNNNYNNYNKKLYYKNYIIN 353


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -3

Query: 310 DCNKINPTGVHNL*TLHKKRITNIYTLQIPIVWMLMYSRSFGQPKISN 167
           + N INP  V+    ++  +     TLQ  +  ML +     + K SN
Sbjct: 32  EINSINPINVYTKAYIYTIKSNMAKTLQFDVHMMLQFRYLDARLKFSN 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,194
Number of Sequences: 438
Number of extensions: 3182
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)