Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6p05
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    27   3.0  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   3.9  

>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 220 DDWSSEGSDVDLKMASDE 273
           DD+S + SD+DL  A+DE
Sbjct: 621 DDYSKDNSDMDLNRANDE 638


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 457 DEDSDKELKIEASEDDELVIPLVXXXXXXXXXNNMDDIEAELKKFEIKDPEHEE 618
           D DS+ +LK E  E DE V+P+             +  EA   +  +++ E E+
Sbjct: 52  DNDSNYDLKPEDDEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEED 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.297    0.121    0.309 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,963
Number of Sequences: 5004
Number of extensions: 26933
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.9 bits)