Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6p05
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   2.4  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   2.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   2.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   2.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   4.3  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 53  KREYRKYRETSKERSRNRTERERSKEPKI 81


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 53  KREYRKYRETSKERSRNRTERERSKEPKI 81


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 53  KREYRKYRETSKERSRNRTERERSKEPKI 81


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 53  KREYRKYRETSKERSRNRTERERSKEPKI 81


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 53  KREYRKYRETSKERSRNRTERERSKEPKI 81


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 53  KREYRKYRETSKERSRNRTERERSKEPKI 81


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 53  KREYRKYRETSKERSRNRTERERSKEPKI 81


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 53  KREYRKYRETSKERSRNRTERERSKEPKI 81


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 53  KREYRKYRETSKERSRNRTERERSKEPKI 81


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 53  KREYRKYRETSKERSRNRTERERSKEPKI 81


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 286 KREYRKYRETSKERSRNRTERERSKEPKI 314


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   KRT*RKFQFQTKRTSRNRLPKSHKRKERV 91
           KR  RK++  +K  SRNR  +   ++ ++
Sbjct: 286 KREYRKYRETSKERSRNRTERERSKEPKI 314


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 38 KRTSRNRLPKSHKRKERVKK 97
          +RTSRNR  +S +R++   K
Sbjct: 32 ERTSRNRYSRSREREQNSYK 51


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 38 KRTSRNRLPKSHKRKERVKK 97
          +RTSRNR  +S +R++   K
Sbjct: 32 ERTSRNRYSRSREREQNSYK 51


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 38 KRTSRNRLPKSHKRKERVKK 97
          +RTSRNR  +S +R++   K
Sbjct: 32 ERTSRNRYSRSREREQNSYK 51


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 38 KRTSRNRLPKSHKRKERVKK 97
          +RTSRNR  +S +R++   K
Sbjct: 32 ERTSRNRYSRSREREQNSYK 51


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 38 KRTSRNRLPKSHKRKERVKK 97
          +RTSRNR  +S +R++   K
Sbjct: 32 ERTSRNRYSRSREREQNSYK 51


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 38 KRTSRNRLPKSHKRKERVKK 97
          +RTSRNR  +S +R++   K
Sbjct: 32 ERTSRNRYSRSREREQNSYK 51


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 38 KRTSRNRLPKSHKRKERVKK 97
          +RTSRNR  +S +R++   K
Sbjct: 32 ERTSRNRYSRSREREQNSYK 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.297    0.121    0.309 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,521
Number of Sequences: 438
Number of extensions: 1650
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.0 bits)