Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6p04
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1364 + 26044559-26044672,26045732-26046334 77 9e-15
01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855... 77 1e-14
07_03_1367 + 26072270-26072374,26074047-26074724 77 2e-14
08_02_0773 + 21043553-21043813,21044775-21045203 70 1e-12
07_03_1369 + 26087947-26088039,26088396-26089073 45 2e-08
09_06_0099 - 20854828-20855117,20855231-20855423,20855507-208556... 40 0.001
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 29 3.3
03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513... 29 4.3
>07_03_1364 + 26044559-26044672,26045732-26046334
Length = 238
Score = 77.4 bits (182), Expect = 9e-15
Identities = 32/100 (32%), Positives = 57/100 (57%)
Frame = +1
Query: 259 EWDFLIFTQHWPATICRIWMEKPTHSCIMPHEQNSWTIHGIWPNKNHSMGPFFCNKTWSF 438
++DF+ F Q W + C + + +P N++TI G+WP+ P +CN +
Sbjct: 29 KFDFMYFVQQWAPSYCSTAPHECEYEPRLP--PNNFTIRGLWPSYEE-WRPEYCNISDRL 85
Query: 439 DPDQVKSIETDLEESWGNIEKEQSLYSLWAHEWTKHGTCA 558
DP Q++ + L +SW ++ + ++ LW+HEW+KHGTC+
Sbjct: 86 DPGQIQDLVKPLNQSWPSLLRNETNLELWSHEWSKHGTCS 125
>01_06_1664 -
38984545-38984615,38984706-38984802,38985362-38985523,
38985736-38985825,38986125-38986226,38986373-38986446,
38986587-38986615,38986766-38986989
Length = 282
Score = 77.0 bits (181), Expect = 1e-14
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Frame = +1
Query: 250 KNNEWDFLIFTQHWPATICRIWMEK-PTHSCIMPHEQNSWTIHGIWPNKNHSMGPFFCNK 426
K E+D+ WP TIC + C ++TIHG+WP+ + P C
Sbjct: 43 KQREFDYFALALQWPGTICASTRHCCAINGCCRSEPLQTFTIHGLWPDYDDGTWPACCRH 102
Query: 427 TWSFDPDQVKSIETDLEESWGNI--EKEQSLYS----LWAHEWTKHGTCAASIEPLNCEL 588
T SFD D++ ++ LE+ W ++ + +S WAHE KHGTC++ + + EL
Sbjct: 103 T-SFDMDKILPLKPTLEKYWPSLYCSSSSTCFSGKGPFWAHE--KHGTCSSPV--VKDEL 157
Query: 589 KYFTKGLEWLKKYTMKNIL 645
+YFT L+ KY + +L
Sbjct: 158 EYFTTALDLYFKYNVTEML 176
>07_03_1367 + 26072270-26072374,26074047-26074724
Length = 260
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Frame = +1
Query: 259 EWDFLIFTQHWPATICRIWMEKPTHSCIM-PHEQNSWTIHGIWPNKNHSM-GPFF---CN 423
E+DF+ Q WP + C TH C++ P + +TIHG+WP+ N + G + CN
Sbjct: 26 EFDFMYLAQQWPDSYCS------THKCLVKPPPPSHFTIHGLWPSYNKLIDGKMWLEDCN 79
Query: 424 KTWSFDPDQVKSIETDLEESWGNIEKEQSLYSLWAHEWTKHGTCA 558
K DP Q++ +E L++ W ++ +Q+ W+ EW KHGTC+
Sbjct: 80 KEDPLDPTQIQDLEKQLDQKWPSL--KQTNLEFWSLEWKKHGTCS 122
>08_02_0773 + 21043553-21043813,21044775-21045203
Length = 229
Score = 70.1 bits (164), Expect = 1e-12
Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Frame = +1
Query: 259 EWDFLIFTQHWPATICRIWMEKPTHSCIMPHEQN---SWTIHGIWPNKNHSMGPFFCNKT 429
++DF WP + C SC P + IHG+WPN++ P C+
Sbjct: 26 DYDFFFLVLQWPGSYC-----DTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPD 80
Query: 430 WSFDPDQVKSIETDLEESWGNIE-KEQSLYSLWAHEWTKHGTCAASIEPLNCELKYFTKG 606
FDP +V + + W + WAHEW KHGTCAA+ L E YF
Sbjct: 81 SEFDPSKVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAA--ALGDEHGYFEAA 138
Query: 607 L 609
L
Sbjct: 139 L 139
>07_03_1369 + 26087947-26088039,26088396-26089073
Length = 256
Score = 45.2 bits (102), Expect(2) = 2e-08
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 409 PFFCNKTWSFDPDQVKSIETDLEESWGNIE-KEQSLYSLWAHEWTKHGTCAASIEPLNCE 585
P +C+ P ++K + +L+ +W + K + W++EW KHGTC+ +
Sbjct: 104 PEYCDDGNKLRPWEIKDLVAELDANWPTLSCKGGKSFEFWSYEWKKHGTCSGM-----GQ 158
Query: 586 LKYFTKGLEWLKKYTMKNILXNA 654
YF LE K++ + +L A
Sbjct: 159 HGYFAAALELKKRHDLAAVLAGA 181
Score = 30.7 bits (66), Expect(2) = 2e-08
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +1
Query: 256 NEWDFLIFTQHWPATICRIWMEKPTHSCIMPHEQN---SWTIHGIWPN 390
+E+DF Q WP + C C P + IHG+WPN
Sbjct: 21 DEFDFFYLVQQWPGSFC-----DTQAGCCFPDTGKPAAEFGIHGLWPN 63
>09_06_0099 -
20854828-20855117,20855231-20855423,20855507-20855668,
20856384-20856497
Length = 252
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 418 CNKTWSFDPDQVKSIETDLEESWGNIE-KEQSLYSLWAHEWTKHGTCAASIEPLNCELKY 594
CN FD +++ SIE +L W NI+ + W EW +G C+ EL Y
Sbjct: 82 CNSDNPFDINKLDSIENNLNHYWSNIKCPRTDGVNSWKSEWNSYGVCSGL-----KELDY 136
Query: 595 FTKGLEWLK 621
F GL+ K
Sbjct: 137 FKAGLQLRK 145
>05_03_0653 +
16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +1
Query: 184 WRNLSYAIFLLSCFTYAELSDTKNNE-----WDFLIFTQH 288
W + SY + + C Y ++S K++E WDFLI ++H
Sbjct: 490 WESFSYEVEKI-CAKYGQISPAKSSESPCTAWDFLINSKH 528
>03_06_0125 +
31850858-31850905,31851032-31851109,31851221-31851337,
31851346-31851642,31852498-31852509,31852737-31852822,
31853516-31853660,31853767-31853862,31854333-31854424,
31854696-31854797,31854891-31855037,31855116-31855266,
31855418-31855480,31855570-31855806,31856081-31856185,
31856263-31856376,31856459-31857037,31857279-31857286,
31857858-31858004,31858077-31858203
Length = 916
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 275 YSRNTGRRLYAEYGWRNLRTLVLCHTSRIHGLFMVYGQIKITPWDHFSVIRLGHLT 442
YSRN + + W + R C +HGL +V G+I I+ +++ + HLT
Sbjct: 812 YSRNGDSLVQIKDSWTHGRWAQACV---VHGLLVVAGRISISSGSFNNLLGVTHLT 864
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,121,520
Number of Sequences: 37544
Number of extensions: 357833
Number of successful extensions: 882
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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