Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o24
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   2.5  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   3.3  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    27   3.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.4  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    26   5.8  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   7.6  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   7.6  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 515 RQRYFKYLAFRSRLIVEIGRRENSFNFKQCFFL 613
           RQ   + LA   ++++ + +   +FN + CF L
Sbjct: 486 RQEQMRLLAVLEQVLINVAKNTPAFNLQSCFLL 518


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 285 IASFHRSNGGWLVASRIPFTGKQNLKISRRVED 383
           I   H   GG+LV + IP      +KI+ ++ED
Sbjct: 280 IIGIHPIFGGFLVGTIIPHENDLTVKITEKIED 312


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 616 LQKKTLFKIKTVFTPAYFHYKSAPERKVFEISLPIVSVPRK 494
           L ++T+ ++KT    A F    +P  KV   S PIV++ +K
Sbjct: 59  LPERTVERLKTECNAALFGAVQSPTHKVAGYSSPIVALRKK 99


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 269 IYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQGVF 99
           IY    F+PQ   + R        P  +  +L+  I+G+ K  + S    EK  GVF
Sbjct: 460 IYVREAFVPQNHPVLRAPSLFTDSPTYEDMLLLNSIIGIEKPPVASQKDLEKAGGVF 516


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 334 IRDATNHPPLER*NDAIITGSSFIFQPFFCPRFLRYRER 218
           ++   NHP L    + +  G   +F P F PR LR R+R
Sbjct: 565 LKKICNHPDLLNLTEDL-EGCEALFPPGFIPRELRGRDR 602


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 22 SGEVWVVLDWLIVAVGA 72
          S  VW VL W++ AVGA
Sbjct: 12 STTVWHVLSWILYAVGA 28


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 571 AYFHYKSAPERKVFEISLPIVSVPR---KPCLPT 479
           AY    ++PE KVF+  +P+   P+   KP  PT
Sbjct: 350 AYVAKSTSPELKVFDTVMPVALSPKPAQKPPSPT 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,143
Number of Sequences: 5004
Number of extensions: 56870
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)