Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o24
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41990-3|AAY44010.1|  291|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81463-11|CAC70074.2|  376|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z81463-10|CAB03854.4|  352|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z81129-8|CAC70106.2|  376|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81129-7|CAB03409.4|  352|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U41990-3|AAY44010.1|  291|Caenorhabditis elegans Hypothetical
           protein F52B10.2 protein.
          Length = 291

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 577 TPAYFHYKSAPER-KVFEISLPIVSVPRKP 491
           +PAYFH K APER K    +  I+ V R P
Sbjct: 92  SPAYFHSKMAPERIKSLNPNTKIIIVVRDP 121


>Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical
           protein H03A11.1 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 385 RGAP*ILISVNVSS*LFEKLSKHFKMYFFISESAGRVFVAR 507
           R  P +   +N+++ LFEK  K  K  FF S +    FV+R
Sbjct: 232 RAIPTVGRVLNMTTELFEKAEKKLKKTFFFSPAKNFCFVSR 272


>Z81463-11|CAC70074.2|  376|Caenorhabditis elegans Hypothetical
           protein C06B8.2b protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = -3

Query: 335 DTRCNQPSAVRTMKRCNH-------NGLFIYFPTFFLPQVSTISRKVLRSNRQPGDDSAI 177
           D  C + S+++T     H       NGL  YFPTF           VL++N +    SA+
Sbjct: 242 DVNCTKNSSIQTFINSTHSNYAVLTNGLLDYFPTF--------DTDVLKTNEKGLQVSAM 293

Query: 176 LIY 168
           L+Y
Sbjct: 294 LVY 296


>Z81463-10|CAB03854.4|  352|Caenorhabditis elegans Hypothetical
           protein C06B8.2a protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = -3

Query: 335 DTRCNQPSAVRTMKRCNH-------NGLFIYFPTFFLPQVSTISRKVLRSNRQPGDDSAI 177
           D  C + S+++T     H       NGL  YFPTF           VL++N +    SA+
Sbjct: 242 DVNCTKNSSIQTFINSTHSNYAVLTNGLLDYFPTF--------DTDVLKTNEKGLQVSAM 293

Query: 176 LIY 168
           L+Y
Sbjct: 294 LVY 296


>Z81129-8|CAC70106.2|  376|Caenorhabditis elegans Hypothetical
           protein C06B8.2b protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = -3

Query: 335 DTRCNQPSAVRTMKRCNH-------NGLFIYFPTFFLPQVSTISRKVLRSNRQPGDDSAI 177
           D  C + S+++T     H       NGL  YFPTF           VL++N +    SA+
Sbjct: 242 DVNCTKNSSIQTFINSTHSNYAVLTNGLLDYFPTF--------DTDVLKTNEKGLQVSAM 293

Query: 176 LIY 168
           L+Y
Sbjct: 294 LVY 296


>Z81129-7|CAB03409.4|  352|Caenorhabditis elegans Hypothetical
           protein C06B8.2a protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = -3

Query: 335 DTRCNQPSAVRTMKRCNH-------NGLFIYFPTFFLPQVSTISRKVLRSNRQPGDDSAI 177
           D  C + S+++T     H       NGL  YFPTF           VL++N +    SA+
Sbjct: 242 DVNCTKNSSIQTFINSTHSNYAVLTNGLLDYFPTF--------DTDVLKTNEKGLQVSAM 293

Query: 176 LIY 168
           L+Y
Sbjct: 294 LVY 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,299,407
Number of Sequences: 27780
Number of extensions: 320774
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)