Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o21
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       29   0.90 
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   6.4  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    26   6.4  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   6.4  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.4  

>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 686 IYTGISTRSTLEVYHIHQNLSMVCH-KLLHS 597
           I+  I  R  +E+ H H +LS +CH  +LH+
Sbjct: 76  IFRNIVIRENIEIVHGHGSLSFLCHDAILHA 106


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 106 FFKILSIYVCYCFPPVLNN*KLIIYLNFCQFLYS 5
           F   LS+ V YC        KL+IYL +C ++YS
Sbjct: 32  FIPRLSLTVKYCLAV-----KLLIYLLYCWYIYS 60


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 106 FFKILSIYVCYCFPPVLNN*KLIIYLNFCQFLYS 5
           F   LS+ V YC        KL+IYL +C ++YS
Sbjct: 32  FIPRLSLTVKYCLAV-----KLLIYLLYCWYIYS 60


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 106 FFKILSIYVCYCFPPVLNN*KLIIYLNFCQFLYS 5
           F   LS+ V YC        KL+IYL +C ++YS
Sbjct: 32  FIPRLSLTVKYCLAV-----KLLIYLLYCWYIYS 60


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 106 FFKILSIYVCYCFPPVLNN*KLIIYLNFCQFLYS 5
           F   LS+ V YC        KL+IYL +C ++YS
Sbjct: 32  FIPRLSLTVKYCLAV-----KLLIYLLYCWYIYS 60


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 295 LLEGCSYRYIWVVHANYFGSFSIYLFN 375
           L+E   Y  +W+ +A YF   S + FN
Sbjct: 263 LIEHPGYLNLWMKYAEYFTGISEFTFN 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,319
Number of Sequences: 5004
Number of extensions: 63033
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)