Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o21
         (731 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047015-1|AAH47015.1|  294|Homo sapiens transmembrane protein 1...   148   2e-35

>BC047015-1|AAH47015.1|  294|Homo sapiens transmembrane protein 110
           protein.
          Length = 294

 Score =  148 bits (359), Expect = 2e-35
 Identities = 66/143 (46%), Positives = 92/143 (64%)
 Frame = +2

Query: 296 CSKDALTDTYGWFMQIILAVLAFTCLIGKRFCEPRFARRPWLIWFYDTSKQGLGALIIHA 475
           C   AL  ++G F+Q +L V+AF+ L+ KRF EP+  RRPW IWF DTSKQ +G L IH 
Sbjct: 27  CESGALMHSFGIFLQGLLGVVAFSTLMLKRFREPKHERRPWRIWFLDTSKQAIGMLFIHF 86

Query: 476 ANVWLSPHLTGNPCTWYIVNFMLDSTLGLLIIWAGIRLAQHCARVYDIPLINFGEYGKPP 655
           ANV+L+     +PC+ Y++NF+LD+T+G+L+I+ G+R             + FGEYG P 
Sbjct: 87  ANVYLADLTEEDPCSLYLINFLLDATVGMLLIYVGVRAVSVLVEWQQWESLRFGEYGDPL 146

Query: 656 MCSAWICQCILYAALAPFAKSVL 724
            C AW+ QC LY  +  F KSV+
Sbjct: 147 QCGAWVGQCALYIVIMIFEKSVV 169


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,124,750
Number of Sequences: 237096
Number of extensions: 2241032
Number of successful extensions: 3372
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3372
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)