Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o13
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   132   2e-32
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   130   1e-31
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   121   5e-29
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    31   0.086
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   0.60 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   1.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   1.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   3.2  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   4.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   5.6  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   7.4  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  132 bits (319), Expect = 2e-32
 Identities = 65/136 (47%), Positives = 82/136 (60%)
 Frame = +1

Query: 1   PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 180
           P+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD            
Sbjct: 67  PSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALR 126

Query: 181 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKV 360
              LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     Y+ KL +  K A    
Sbjct: 127 VLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAKQKKIAS--- 181

Query: 361 SKATTPFTTIIQSYGY 408
           +K  +P    +  +GY
Sbjct: 182 AKEASPVNQKLSQFGY 197


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  130 bits (313), Expect = 1e-31
 Identities = 62/123 (50%), Positives = 77/123 (62%)
 Frame = +1

Query: 1   PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 180
           P+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD            
Sbjct: 67  PSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALR 126

Query: 181 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKV 360
              LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     Y+ KL +  K A  K 
Sbjct: 127 VLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAKQKKIASAKA 184

Query: 361 SKA 369
           + +
Sbjct: 185 ASS 187


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  121 bits (292), Expect = 5e-29
 Identities = 53/99 (53%), Positives = 67/99 (67%)
 Frame = +1

Query: 1   PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 180
           P+RG FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  +G PPPFD            
Sbjct: 67  PSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALR 126

Query: 181 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 297
              LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 127 VLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 31.1 bits (67), Expect = 0.086
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 286 KGKAVKRVAYEKKLKRITKDAGEKVSKATTP 378
           KGK V R+ Y+ K   +  D+GE+++K   P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 223 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 357
           R S E   K  D   K E+KR+ K  K+   EKK K+  K+  +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 265 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFT 384
           R  + KR+ K  +R+AYE+ LKR  K   EK +K++   T
Sbjct: 647 RIAQQKREEK--RRLAYEESLKRHAKKLHEKKTKSSQDAT 684


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 277 DKRKGKAVKRVAYEKKLKRITKDAGE-KVSKATTPFTTIIQSYG 405
           DKR+   +  + YEK+L+ + K+  E  +     P  ++I+ YG
Sbjct: 18  DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYG 61


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 131 GHPSYVRSLLRAFLPRSVLCGIMP 60
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 396 LDDGSEWCCRLRHLLTSILGDPLKFLFIGNSLNSL 292
           L D  E   R+RH   S++G+P+ + +I   ++ L
Sbjct: 408 LPDRYEEASRVRHCALSLVGEPIFYPYINEFVSML 442


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 110 SLLRAFLPRSVLCGIMPLTVFHRILDGAL 24
           S L AFLP+  LC ++PL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 378 WCCRLRHLLTSILGDPLKF 322
           W  RL + +TSI  +PLKF
Sbjct: 853 WALRLLYQITSIWENPLKF 871


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,150
Number of Sequences: 5004
Number of extensions: 38569
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)