Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6o13
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 134 4e-32
07_01_0071 - 522920-523063,524125-524212,524289-524677 133 6e-32
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 108 2e-24
11_04_0056 + 12942802-12942920,12943022-12943115 58 3e-09
04_03_0232 - 13049649-13052807 31 0.45
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 31 0.60
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 29 1.4
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 29 1.4
05_03_0238 - 10783451-10783735,10784686-10785762 29 2.4
05_01_0301 - 2356880-2357959 28 4.2
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 28 4.2
12_01_0645 - 5468344-5470266 27 5.6
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 27 5.6
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166 27 7.3
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 27 7.3
04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092... 27 7.3
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 134 bits (323), Expect = 4e-32
Identities = 59/114 (51%), Positives = 81/114 (71%)
Frame = +1
Query: 1 PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 180
P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 71 PSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALK 130
Query: 181 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 342
L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAY+++ K++ K
Sbjct: 131 VLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA--KVAYDRR-KQLAK 181
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 133 bits (322), Expect = 6e-32
Identities = 59/114 (51%), Positives = 79/114 (69%)
Frame = +1
Query: 1 PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 180
P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 71 PSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALK 130
Query: 181 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 342
L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAYE++ K++T+
Sbjct: 131 VLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYERR-KQLTR 181
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 108 bits (260), Expect = 2e-24
Identities = 45/89 (50%), Positives = 59/89 (66%)
Frame = +1
Query: 1 PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 180
P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 5 PSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALK 64
Query: 181 XFCLKPGRNYCHVGRLSHEIGWKYRDVVR 267
L+PG YC +G+LS E+GW Y D +R
Sbjct: 65 VLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 85 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 252
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.45
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 295 PCPSSCLQAYEQHHGISIQFHGTVCLH 215
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 30.7 bits (66), Expect = 0.60
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 233 MKLDGNTVMLFVSLKTRGRARLLRELPMKRNLRGSPRMLVRRCRRRQHHSLPS 391
MK D +L VS LL+EL ++ LR ++ RCR+ HH + S
Sbjct: 92 MKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAVLLRCRKEDHHHVES 144
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 348 W*EGVEGDNTIHYHHPILWIQLGLRNYNKNKPFG 449
W +G++ D + HHP L++ R Y K P G
Sbjct: 1055 WWDGLQWDGLENGHHPSLYVPTHSRYYKKKLPRG 1088
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 25 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 144
R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 619 RIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 223 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGE 354
+L +EI RD+ ++ EDK +K A E K ++ K E
Sbjct: 177 KLGNEIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDKSLAE 220
>05_01_0301 - 2356880-2357959
Length = 359
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 266 VSLKTRGRARLLRELPMKRNLRGSPRMLVRRCR-RRQHHSLPSSNP 400
V LKT G LLR +P+ + R+ +R CR R + P + P
Sbjct: 76 VVLKTCGTTPLLRAVPVLLRAAAALRLRLRSCRYSRGEYLFPEAQP 121
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 214 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY-EKKLKRITKDAG 351
H G E G +VVR L D +GKAV+R+ +++L+ + + G
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLG 211
>12_01_0645 - 5468344-5470266
Length = 640
Score = 27.5 bits (58), Expect = 5.6
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 205 NYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY-EKKLKRITKDAGEKVSKATTPF 381
+Y +G L E W+ RD V +LED AV AY EKK K G+ S +
Sbjct: 59 SYSGLGVLLDESLWRLRDAVEELED-----AVDEHAYHEKKTKEREVSDGDLGSSFSKMK 113
Query: 382 TTIIQS 399
+I+S
Sbjct: 114 QRVIKS 119
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 293 RLLRELPMKRNLRGSPRMLVRRCRRRQ 373
R++ EL + RN+R +P+ML+ ++R+
Sbjct: 177 RIVEELGLARNVRLTPKMLIEAIKQRK 203
>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
Length = 940
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 223 RLSHEIGWKYRDVVRKLEDKRKGK 294
R+ HEIG K R + RKLE+ K K
Sbjct: 116 RVHHEIGNKIRSLNRKLEEIAKDK 139
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 230 PMKLDGNTVMLFVSLKTRGRARLLRE-LPMKRNLRGSPRMLVRRCRRRQHHSLPSS 394
P N VMLF +L++ R RLLR+ +K + P+ + R + +H + +S
Sbjct: 360 PYVASANIVMLFDTLQSMLRLRLLRQGFKVKDEVWTLPKPVRPRLPKHEHEAYTTS 415
>04_03_0779 -
19507771-19507992,19508678-19508990,19509235-19509296,
19509845-19509904,19510260-19510367,19510452-19510561,
19510656-19510701,19510812-19510884,19510970-19511100,
19511270-19511356,19511871-19511968,19512849-19512971,
19513091-19513286
Length = 542
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 280 CLQAYEQHHGISIQFHGTVCLHDSNYGQVSDRRHV 176
C+Q ++ HG + G + HD +YG ++ R+V
Sbjct: 486 CVQHGKKEHGYEPKRDGNIDYHDLSYGTPAEVRNV 520
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,383,065
Number of Sequences: 37544
Number of extensions: 273108
Number of successful extensions: 745
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -