Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6o13
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 135 2e-32
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 135 2e-32
AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical ... 32 0.17
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 30 0.93
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 1.2
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 27 4.9
AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein. 27 8.6
AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein. 27 8.6
AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1 suppres... 27 8.6
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 135 bits (326), Expect = 2e-32
Identities = 62/137 (45%), Positives = 83/137 (60%)
Frame = +1
Query: 1 PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 180
PARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 67 PARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSAS 125
Query: 181 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKV 360
F L+P R +C VGRLSHE+GW+++DVV KLE KRK K +KK+ ++ A +
Sbjct: 126 RFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNA 185
Query: 361 SKATTPFTTIIQSYGYN 411
+ + II++ GYN
Sbjct: 186 APKIAQYQKIIEALGYN 202
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 135 bits (326), Expect = 2e-32
Identities = 62/137 (45%), Positives = 83/137 (60%)
Frame = +1
Query: 1 PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 180
PARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 67 PARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSAS 125
Query: 181 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKV 360
F L+P R +C VGRLSHE+GW+++DVV KLE KRK K +KK+ ++ A +
Sbjct: 126 RFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNA 185
Query: 361 SKATTPFTTIIQSYGYN 411
+ + II++ GYN
Sbjct: 186 APKIAQYQKIIEALGYN 202
>AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical
protein F15E6.9 protein.
Length = 664
Score = 32.3 bits (70), Expect = 0.17
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 205 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKKLKRITKDAGEKV 360
+YC G+ S H I WKYRD V ++ K K A++ R A E K I D +KV
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKV 336
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.9 bits (64), Expect = 0.93
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 313 RQLS*QPCPSSCLQAYEQHHGISIQFHGTVCLHDSNY 203
R+ S C S L +E HHGI + G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 295 PCPSSCLQAYEQHHGISIQFHGTVCLHD 212
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 270 LTNNITVFPSNFMGQSAYMTVITARFQTE 184
L NNI VFPSN + +++ MT+ R +T+
Sbjct: 27 LENNILVFPSN-ISEASGMTLFHGRIETK 54
>AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 238 IGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQS 399
IG+ Y + R + D K V + + LK I + GE+VSK F +++S
Sbjct: 180 IGYTYTQLTRLIGDP---KYVDCITSDTYLKLIVRWVGEEVSKREEIFRLLLES 230
>AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 238 IGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQS 399
IG+ Y + R + D K V + + LK I + GE+VSK F +++S
Sbjct: 180 IGYTYTQLTRLIGDP---KYVDCITSDTYLKLIVRWVGEEVSKREEIFRLLLES 230
>AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1
suppressor/dio uptake defective/raf enhancer protein 1
protein.
Length = 909
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 238 IGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQS 399
IG+ Y + R + D K V + + LK I + GE+VSK F +++S
Sbjct: 180 IGYTYTQLTRLIGDP---KYVDCITSDTYLKLIVRWVGEEVSKREEIFRLLLES 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,124,732
Number of Sequences: 27780
Number of extensions: 222942
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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