Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6o12
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0361 - 12961101-12961201,12961683-12961772,12961910-129619... 105 3e-23
05_03_0055 - 7863410-7863530,7864205-7864314,7864341-7864553,786... 44 1e-04
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 41 0.001
08_01_0610 - 5367271-5367312,5367737-5367805,5368208-5368360,536... 39 0.005
12_01_0082 - 662016-663215 31 1.2
01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888 31 1.2
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478 30 1.6
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 30 2.1
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 29 3.6
12_01_0764 + 6934570-6934726,6935150-6935316,6935408-6935490,693... 29 4.8
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 28 6.4
04_04_0557 + 26227263-26227707,26228179-26228342,26228432-262285... 28 6.4
>05_03_0361 -
12961101-12961201,12961683-12961772,12961910-12961980,
12962079-12962158,12962264-12962324,12963620-12963681,
12963826-12963833,12964273-12964609,12964946-12965089,
12965235-12965339
Length = 352
Score = 105 bits (253), Expect = 3e-23
Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Frame = +1
Query: 208 CQTPDPTTKDFMFQQTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPA 387
CQ P T+ M+R+KDP+ ++ FY+ V+GM+LLK+L FP MKFSL+F+GYE+
Sbjct: 186 CQAPSAETEAGCL---MFRVKDPKVSLDFYSRVMGMSLLKRLDFPEMKFSLYFLGYEDVE 242
Query: 388 EVPRDDDARTKWAMTRKATLELTYNWGTESDD--SSYHN 498
P D RT W ++ATLELT+NWGTE+D YHN
Sbjct: 243 SAPTDPVKRTVWTFGQRATLELTHNWGTENDPEFKGYHN 281
Score = 74.1 bits (174), Expect = 1e-13
Identities = 30/42 (71%), Positives = 38/42 (90%)
Frame = +3
Query: 486 KLPQRFEQLGVKFIKRPNDGKMKGLAFIQDPDGYWIEIFTSN 611
K +RFE+LGV+F+K+P+DGKMKG+AFI+DPDGYWIEIF N
Sbjct: 301 KACERFERLGVEFVKKPDDGKMKGIAFIKDPDGYWIEIFDLN 342
>05_03_0055 -
7863410-7863530,7864205-7864314,7864341-7864553,
7865342-7865406,7865511-7865635,7865936-7866164,
7866270-7866348
Length = 313
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/76 (38%), Positives = 39/76 (51%)
Frame = +1
Query: 256 MYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAMTR 435
+YR+ D KTI FYT LGM LL++ P +++ F+GY P D
Sbjct: 92 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEERYTNAFLGYG-----PEDS---------- 136
Query: 436 KATLELTYNWGTESDD 483
+ELTYN+G ES D
Sbjct: 137 HFVVELTYNYGVESYD 152
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +1
Query: 256 MYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGY 375
+YR+ D +TI FYT LGM LL++ P K++ F+GY
Sbjct: 88 VYRVGDIDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGY 127
Score = 37.1 bits (82), Expect = 0.014
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 250 QTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAM 429
Q M R+ + + I FY GM LL++ P K+++ MGY P D
Sbjct: 216 QVMLRVGNLDRAISFYEKACGMELLRKRDNPEYKYTVAMMGYG-----PED--------- 261
Query: 430 TRKATLELTYNWG-TESD 480
+ A LELTYN+G TE D
Sbjct: 262 -KNAVLELTYNYGVTEYD 278
>08_01_0610 -
5367271-5367312,5367737-5367805,5368208-5368360,
5368441-5368548,5368689-5368736,5368868-5369083,
5369195-5369259,5369478-5369602,5369675-5369793
Length = 314
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +1
Query: 250 QTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAM 429
Q M R+ D ++I FY LGM LL++ P K+++ +GY D+D T
Sbjct: 158 QVMLRVGDLDRSIKFYEKALGMKLLRKKDVPDYKYTIAMLGY-------ADEDKTT---- 206
Query: 430 TRKATLELTYNWG 468
+ELTYN+G
Sbjct: 207 ----VIELTYNYG 215
Score = 37.9 bits (84), Expect = 0.008
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +1
Query: 169 MAQGISPQEI-EALCQTPDPTTKDFMFQQTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPA 345
MA G ++ E + + P K + +YR+ D +TI YT GM LL++ P
Sbjct: 1 MASGSEAEKSPEVVLEWPKKDKKRLL--HAVYRVGDLDRTIKCYTECFGMKLLRKRDVPE 58
Query: 346 MKFSLFFMGYENPAEVPRDDDARTKWAMTRKATLELTYNWGTESDD 483
K++ F+G+ P D T +A LELTYN+G + D
Sbjct: 59 EKYTNAFLGFG-----PED----TNFA------LELTYNYGVDKYD 89
>12_01_0082 - 662016-663215
Length = 399
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 157 TNKKMAQGISPQE-IEALCQTPDPTTKDFMFQQTMY--RIKDPRKTIPFYTGVLGMTLLK 327
TNK ++ G+ ++ + + Q+ DP TKD+ F+ Y KD R P+++ +
Sbjct: 147 TNKNISGGMWDEDSLYVMSQSADPETKDYCFEVLNYTSSCKDFRGRTPYWSSLQPPPFAN 206
Query: 328 QLH 336
+H
Sbjct: 207 YMH 209
>01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888
Length = 215
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 495 QRFEQLGVKFIKR--PNDGKMKGLAFIQDPDGYWIEIFT 605
+R +++GV++++R G F DPDG+ IEI T
Sbjct: 104 RRLKEMGVRYVQRRVEEGGVYVDQIFFHDPDGFMIEICT 142
>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
Length = 209
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +3
Query: 489 LPQRFEQLGVKFIKRP---NDGKMKGLAFIQDPDGYWIEI 599
+ +R ++G++++KR +G F +DPDG+ IEI
Sbjct: 132 MEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDPDGFMIEI 171
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 474 ERRLKLPQRFEQLGVKFIKR--PNDGKMKGLAFIQDPDGYWIEI 599
E + + +R ++LG+ +I+R G F DPDG+ IEI
Sbjct: 98 ESMVAVERRLKELGIPYIQRCVEEGGIYVDQIFFHDPDGFMIEI 141
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 250 QTMYRIKDPRKTIPFYTGVLGM 315
++++RI P+ + +YTG+LGM
Sbjct: 118 ESLFRINHPKLPLSYYTGILGM 139
>12_01_0764 +
6934570-6934726,6935150-6935316,6935408-6935490,
6935588-6935966
Length = 261
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 250 QTMYRIKDPRKTIPFYTGVLGM 315
+T+++I P + +YTG+LGM
Sbjct: 33 ETLFKINHPELPLSYYTGILGM 54
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 250 QTMYRIKDPRKTIPFYTGVLGMT 318
+T+++I P + +YTGVLG+T
Sbjct: 130 ETLHKINHPDLPLSYYTGVLGVT 152
>04_04_0557 +
26227263-26227707,26228179-26228342,26228432-26228529,
26228620-26228754,26228842-26229031,26229117-26230223
Length = 712
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 284 VFLGSLILYIVCWNIKSLVVGSGVWHRASISCGEIPWAI 168
+F+GS+ILY W K G + + CG+ WA+
Sbjct: 641 MFMGSVILYFWEWRNKDEAQSFGPAVASGLMCGDGLWAL 679
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,034,908
Number of Sequences: 37544
Number of extensions: 364097
Number of successful extensions: 787
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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