Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o12
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81112-1|CAB03272.2|  673|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z81112-1|CAB03272.2|  673|Caenorhabditis elegans Hypothetical
           protein T02B5.1 protein.
          Length = 673

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -3

Query: 318 CHSEDTSVKRYSLPWIFDPVHCLLE---HKILGSGIWRLA*SLYFLWRNPLGHFFISCLE 148
           C SE+    + S   + +   CL +    +IL + +W L  S YFL   P+   F++   
Sbjct: 263 CLSEEIGFNKLSEEQVENTYSCLRKKSAQQILDAQLWLLQNSTYFLGAPPIDEHFLTDYP 322

Query: 147 KNIKFSSNLKLFN 109
           +N+  S ++   N
Sbjct: 323 ENLYASKSIYPIN 335


>AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical
           protein C17H12.4 protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +1

Query: 220 DPTTKDFMFQQTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEV 393
           +P  ++  +Q+ M   K P+K IP  TG    T  +  H PA K     +G+ENP EV
Sbjct: 317 EPLIQEIPYQEFM---KSPKK-IPMLTGC---TRYEMDHSPAPKPIGQALGFENPEEV 367


>Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical
           protein T05E12.1 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = -2

Query: 652 LHRYLFNTVHIQTTLLVNISIQ*PSGS*MKARPFILPSLGRLIN 521
           LHR LF T+ +Q TLL  I++  P GS + A PF    LG  +N
Sbjct: 241 LHRQLFFTLTLQ-TLLPGITMFIPVGS-LIALPFFGVDLGLEVN 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,278
Number of Sequences: 27780
Number of extensions: 332637
Number of successful extensions: 722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)