Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o12
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.2  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.0  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.7  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.7  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 426 GPFSSGVIVSRYFSWILIAHKEQRKLHCWKMQLL--K*CHSEDTSVK 292
           G  S  +++     W+++ H E+R +     +L+  K  H+ ++ +K
Sbjct: 75  GEISPAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHALESGLK 121


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 286 IPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVP 396
           +PF+T  L     +    P +   LF++GY N A  P
Sbjct: 23  LPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINP 59


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 286 IPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVP 396
           +PF+T  L     +    P +   LF++GY N A  P
Sbjct: 471 LPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINP 507


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 237 ILGSGIWRLA*SLYFLW 187
           ++GSG++R+  S+ F W
Sbjct: 382 VIGSGVYRIGSSVEFDW 398


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 590 DRNIHK*CCLNVYCIEKIPV 649
           + N +K  C N+  IE+IPV
Sbjct: 95  NNNNYKQLCYNINYIEQIPV 114


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 590 DRNIHK*CCLNVYCIEKIPV 649
           + N +K  C N+  IE+IPV
Sbjct: 95  NNNNYKQLCYNINYIEQIPV 114


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 590 DRNIHK*CCLNVYCIEKIPV 649
           + N +K  C N+  IE+IPV
Sbjct: 95  NNNNYKQLCYNINYIEQIPV 114


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 590 DRNIHK*CCLNVYCIEKIPV 649
           + N +K  C N+  IE+IPV
Sbjct: 95  NNNNYKQLCYNINYIEQIPV 114


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 590 DRNIHK*CCLNVYCIEKIPV 649
           + N +K  C N+  IE+IPV
Sbjct: 95  NNNNYKQLCYNINYIEQIPV 114


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 170  WPKGFLHKK*RLYARRQIPLPRILCSNKQCTGSKI 274
            W +  +  K RL    ++ +PR     + C GS+I
Sbjct: 1213 WSESNVESKGRLLGFWRVEMPRSNADYEVCIGSQI 1247


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 222 SHYQGFYVPTNNVQDQR 272
           ++Y G+Y+  +NV +QR
Sbjct: 202 ANYTGWYLTKHNVPEQR 218


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 590 DRNIHK*CCLNVYCIEKIPV 649
           + N +K  C N+  IE+IPV
Sbjct: 95  NNNNYKQLCYNINHIEQIPV 114


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -1

Query: 320 NVIPRTPV*KGIVFLGSLILYIVCWNIKSLVVGSGVW 210
           N+  ++PV K  +FL    +++  +N+  +++  G W
Sbjct: 256 NMSKKSPVRKATLFLNMASVFMRIFNLICMMLLIGHW 292


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 222 SHYQGFYVPTNNVQDQR 272
           ++Y G+Y+  +NV +QR
Sbjct: 202 ANYTGWYLTKHNVPEQR 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,020
Number of Sequences: 438
Number of extensions: 4309
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)