Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o09
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    29   0.48 
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    29   0.83 
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    28   1.1  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    27   3.4  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   4.4  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.4  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.9  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    26   5.9  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    26   5.9  

>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
 Frame = +1

Query: 277 EIYYYLNVFIF*LMLFLQVTWCNL*FI*KNPLRVRTSSNMKTEDERTISDVEKSSEKVNE 456
           E+ YYL+  +   M F++   C+   I +     +   ++K  +ER +S+  +S   VNE
Sbjct: 333 EVMYYLSTLMG-AMSFIETLDCSSLTITEEEFNAQIEKSIKKMEERKLSEKSESKTAVNE 391

Query: 457 -LSFEEAFELTGHGRFNHLVLFTSGLIMLNVSMESVGMSY 573
             ++++     G    +  +  ++G+ ++N+  E   M Y
Sbjct: 392 NATYKDPVLSRG---LSSSIDVSTGVALVNLPEELENMKY 428


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +1

Query: 364 NPLRVRTSSNMKTEDERTISDVEKSSEKVNELSF-EEAFELTGHGRFNHLVLFTSGLIML 540
           NP     S N    +E +++DV +S  + + L   +  F+L G        L +  L ++
Sbjct: 5   NPFSKSHSKNSNENNEVSLADVAESDTRRHWLGLTKREFKLMGFAGAGFF-LDSYDLFII 63

Query: 541 NVSMESVGMSYAITSAECELGLNSMHKGLINAAAFIGIIATSFLWGYLG 687
           N+        Y       +    S   GL+NAAA IG +    L+G++G
Sbjct: 64  NLVSPIYEYLYWGGLEGKKPHYPSGIHGLVNAAANIGNVFGQILFGFMG 112


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +1

Query: 475 FELTGHGRFNHLVLFTSGLIMLNVSMESVGMSYAITSAECELGLNSMHKGLINAAAFIGI 654
           F   GH   + + LFT+ L+ +      +GM+ A  SA+  +G+ +     IN  AF G 
Sbjct: 427 FGSQGHWFTSSVFLFTASLVSIIPLAYFIGMAVASISAQSSMGMGA----FIN--AFFGS 480

Query: 655 IATSFLW 675
           +   FL+
Sbjct: 481 VIEVFLY 487


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 619 KGLINAAAFIGIIATSFLWGYLG 687
           +GL+NA+A IG I    L+G++G
Sbjct: 95  RGLVNASANIGNIFGQLLFGFMG 117


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 619 KGLINAAAFIGIIATSFLWGYLG 687
           +G++NAA  IG I    L+G+LG
Sbjct: 85  RGVVNAATNIGNIMGQLLFGFLG 107


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 114 KKGCVLIHRCLDRSN 158
           + GC ++ RCLDR+N
Sbjct: 619 RHGCCILQRCLDRTN 633


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 459 QFVYLLRAFFYIRNCSFVFGFHI 391
           Q VY  +A F  RNC  + GF I
Sbjct: 665 QVVYQYKADFLWRNCGIILGFAI 687


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 619 KGLINAAAFIGIIATSFLWGYLG 687
           +GL+NAA+ IG I    ++G++G
Sbjct: 95  RGLVNAASNIGNIFGQLMFGFMG 117


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 2   SSIRTRASGAREQNSKFQNIYLKKKGHI 85
           + IRTR +  ++ +S FQN+  K+ G++
Sbjct: 139 NDIRTRQTSFQQASSAFQNMQKKQSGNL 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,210
Number of Sequences: 5004
Number of extensions: 51309
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)