Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6o09
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 47 1e-05
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 44 1e-04
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 40 0.001
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 40 0.002
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 30 1.5
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431... 30 1.5
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 30 2.0
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 28 6.0
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 28 6.0
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/77 (28%), Positives = 43/77 (55%)
Frame = +1
Query: 448 VNELSFEEAFELTGHGRFNHLVLFTSGLIMLNVSMESVGMSYAITSAECELGLNSMHKGL 627
V+ + +EA G G+F VL SG+ ++ +ME + +S+ S + E L++ + L
Sbjct: 29 VSTYTVDEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAEWELSAQAESL 88
Query: 628 INAAAFIGIIATSFLWG 678
I + F+G++ ++ WG
Sbjct: 89 ITSVVFVGMLVGAYSWG 105
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/73 (27%), Positives = 42/73 (57%)
Frame = +1
Query: 460 SFEEAFELTGHGRFNHLVLFTSGLIMLNVSMESVGMSYAITSAECELGLNSMHKGLINAA 639
S ++A +G GR+ L+L +G+ ++ +ME + +S+ S + E L S + +I +
Sbjct: 11 SVDDALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITSI 70
Query: 640 AFIGIIATSFLWG 678
F+G++ ++ WG
Sbjct: 71 VFVGMLIGAYTWG 83
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +1
Query: 424 DVEKSSEKVNEL-SFEEAFELTGHGRFNHLVLFTSGLIMLNVSMESVGMSYAITSAECEL 600
D E+ E+ E + ++A G GRF LVL + + + +ME + +S+ S + E
Sbjct: 5 DAEEEEEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAEW 64
Query: 601 GLNSMHKGLINAAAFIGIIATSFLWGYL 684
G++ +GL+++ F G++ + L G +
Sbjct: 65 GVSGAAEGLVSSVVFAGMLIGACLGGLI 92
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/73 (27%), Positives = 41/73 (56%)
Frame = +1
Query: 466 EEAFELTGHGRFNHLVLFTSGLIMLNVSMESVGMSYAITSAECELGLNSMHKGLINAAAF 645
+EA E G G+F LVL +G+ + SME + +S+ E +++ ++ L+++ F
Sbjct: 202 DEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGPLVREEWNISAENESLLSSVVF 261
Query: 646 IGIIATSFLWGYL 684
G++ + WG++
Sbjct: 262 AGMLIGASGWGFV 274
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 532 IMLNVSMESVGMSYAITSAECELGLNSMHKGLINAAAFIGIIATSFLWGYL 684
+ML + + V MS A+ + G +S +F+GI+ +SFLWGY+
Sbjct: 132 VMLLCNADRVVMSVAVVPFAAQYGWSS---------SFLGIVQSSFLWGYV 173
>01_06_0948 -
33242219-33242530,33242632-33242782,33242874-33243111,
33243196-33243298,33243323-33243406,33243640-33243815,
33243943-33244074,33248406-33248967,33249084-33249842
Length = 838
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 487 GHGRFNHLVLFTSGLIMLNVSMESVGMSYAITSAECELGLNS-MHKGLINAAAFIGIIAT 663
GHG V++T+GL L V E G + A +LGL S +K + A + I +
Sbjct: 404 GHGAGTGCVMWTTGLTDLRVYPE-FGQDLFVRLAAADLGLTSKSNKARVIIAIVVSISSV 462
Query: 664 SFL 672
+FL
Sbjct: 463 TFL 465
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 511 VLFTSGLIMLNVSMESVGMSYAITSAECELGLNSMHKGLINAAAFIGIIATSFLWGYL 684
++F L +M+ V MS AI E G N +G+I +SF WGYL
Sbjct: 122 IVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQT---------VGLIQSSFFWGYL 170
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 547 SMESVGMSYAITSAECELGLNSMHKGLINAAAFIGIIATSFLWGYL 684
+M+ V MS AI E G + A +G+I +SF WGYL
Sbjct: 196 NMDRVNMSIAILPMSSEFGWSP---------ATVGLIQSSFFWGYL 232
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 640 AFIGIIATSFLWGYL 684
+F G++ +SFLWGYL
Sbjct: 134 SFAGVVQSSFLWGYL 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,384,932
Number of Sequences: 37544
Number of extensions: 274426
Number of successful extensions: 596
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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