Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o07
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   2.8  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    26   3.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   6.4  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   8.5  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   8.5  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   8.5  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   8.5  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 500 HIY-SYNSXRNTLYFNTIYSNYWKPSEILFDLEL 598
           H+Y +YN  +    F+ + S+Y +P + LFD EL
Sbjct: 262 HMYFNYNYGQFFTLFDRLCSSYRQPDQELFDAEL 295


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 489 NTNHIFIHIIPQGTPYILIPFIVIIGNH 572
           N+ H F  +I QGT  I   F++ I +H
Sbjct: 391 NSQHSFFQLIHQGTKLIPADFLIPIESH 418


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 164 C*WIKNRK*VCY-HFQLKVNFFFWLNLLIRCIFFS 63
           C + KN+  +C  +FQ  +  F W++++ R + FS
Sbjct: 370 CPYGKNKTLICLLNFQSSLLSFEWISIISRALLFS 404


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 486 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 569
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 486 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 569
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 486 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 569
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 486 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 569
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,845
Number of Sequences: 5004
Number of extensions: 25991
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)