Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6o06
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22175-2|CAA80131.2| 520|Caenorhabditis elegans Hypothetical pr... 54 6e-08
Z11115-20|CAA77460.2| 520|Caenorhabditis elegans Hypothetical p... 54 6e-08
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 32 0.29
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 32 0.29
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 32 0.29
Z99709-5|CAB16860.1| 246|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical pr... 29 2.7
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 29 3.5
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 29 3.5
>Z22175-2|CAA80131.2| 520|Caenorhabditis elegans Hypothetical
protein ZK637.1 protein.
Length = 520
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +1
Query: 364 EKGSNSEKA-DFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLT 540
++ +SEK + A+E G+GRF L + G+ ++ M+++ +S I P+ C+ ++
Sbjct: 58 QRSPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGIS 117
Query: 541 TQTKGWLNSIIFIGMMVGAYAWGSVAD 621
+ + + + +F GMM+ + WG + D
Sbjct: 118 SVQQALVTTCVFSGMMLSSTFWGKICD 144
>Z11115-20|CAA77460.2| 520|Caenorhabditis elegans Hypothetical
protein ZK637.1 protein.
Length = 520
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +1
Query: 364 EKGSNSEKA-DFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLT 540
++ +SEK + A+E G+GRF L + G+ ++ M+++ +S I P+ C+ ++
Sbjct: 58 QRSPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGIS 117
Query: 541 TQTKGWLNSIIFIGMMVGAYAWGSVAD 621
+ + + + +F GMM+ + WG + D
Sbjct: 118 SVQQALVTTCVFSGMMLSSTFWGKICD 144
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 32.3 bits (70), Expect = 0.29
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = -3
Query: 425 PYPVSSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 246
P P SS S S SG+ G+T S+ + PG S + T + P
Sbjct: 118 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 174
Query: 245 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 147
GS T+ G ++ YG + +S + G+ +TNS
Sbjct: 175 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 207
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 32.3 bits (70), Expect = 0.29
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = -3
Query: 425 PYPVSSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 246
P P SS S S SG+ G+T S+ + PG S + T + P
Sbjct: 325 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 381
Query: 245 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 147
GS T+ G ++ YG + +S + G+ +TNS
Sbjct: 382 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 414
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 32.3 bits (70), Expect = 0.29
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = -3
Query: 425 PYPVSSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 246
P P SS S S SG+ G+T S+ + PG S + T + P
Sbjct: 325 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 381
Query: 245 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 147
GS T+ G ++ YG + +S + G+ +TNS
Sbjct: 382 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 414
>Z99709-5|CAB16860.1| 246|Caenorhabditis elegans Hypothetical
protein C47B2.5 protein.
Length = 246
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 400 RAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWL 561
R EL G G +A CGL STS E+ V+ F L ++ Q + L
Sbjct: 188 RGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKLGEQGAPTSISNQLRDTL 241
>Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical
protein F09A5.1 protein.
Length = 483
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/65 (20%), Positives = 31/65 (47%)
Frame = +1
Query: 427 RFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIFIGMMVGAYAW 606
R Y+ + + +V+ +D +++ +LP Q ++ G + ++ I M+G+
Sbjct: 5 RKDYISIVILFVVNLINNVDRYTIAGVLPDVQSYYNINDSMGGMIQTVFLISFMIGSPIC 64
Query: 607 GSVAD 621
G + D
Sbjct: 65 GYLGD 69
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
protein.
Length = 1668
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = -2
Query: 261 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 136
R LG HP G VW+ + + HW + + I C
Sbjct: 887 RRLGAACGRIHPRGDGAMVWYQKFEYAIGHWLQKATEHMIGC 928
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = -2
Query: 261 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHWGEWRYQQRIAC 136
R LG HP G VW+ + + HW + + I C
Sbjct: 887 RRLGAACGRIHPRGDGAMVWYQKFEYAIGHWLQKATEHMIGC 928
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.131 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,473,461
Number of Sequences: 27780
Number of extensions: 342839
Number of successful extensions: 874
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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