Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o05
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      28   0.80 
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   9.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.9  

>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 30  HPPATQHIVRK*KLKVYETFIKIAIESYRLAADKVELSFAKPFP 161
           HP ++  IVRK K+  YE      ++  +L ++ +  S +KPFP
Sbjct: 339 HPSSSSPIVRKKKVLRYEE----DLDDMKLTSEGLSKSLSKPFP 378


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 7   PTYSHAANIHPPLNTLYV 60
           PT ++ A+ +PP NT+YV
Sbjct: 413 PTNTNPADQNPPCNTIYV 430


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 208  IEHVSRLIIKIGSRERGN 155
            IE + RLI+++GSR+R N
Sbjct: 1401 IEPIERLILEMGSRKRFN 1418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,615
Number of Sequences: 5004
Number of extensions: 43040
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)