Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o05
         (554 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61520-1|AAB58468.1| 1259|Homo sapiens GT334 protein protein.          29   8.3  
U61500-1|AAC51826.1| 1259|Homo sapiens GT334 protein protein.          29   8.3  
BC101728-1|AAI01729.1| 1259|Homo sapiens transmembrane protein 1...    29   8.3  
AB001523-1|BAA21099.1| 1259|Homo sapiens TMEM1 protein.                29   8.3  
AB001517-1|BAA21136.1|  143|Homo sapiens TMEM1 protein protein.        29   8.3  

>U61520-1|AAB58468.1| 1259|Homo sapiens GT334 protein protein.
          Length = 1259

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 271  VGLYNYIPHHYAMYKQLDID-*IEHVSRLIIKIGSRERGNGFAKLNSTLSAA 119
            V L+ Y+PHH A   QLD D  IE+ S  + K G  +  +   K   ++ +A
Sbjct: 1162 VRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPDSSSLKSRGSVHSA 1213


>U61500-1|AAC51826.1| 1259|Homo sapiens GT334 protein protein.
          Length = 1259

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 271  VGLYNYIPHHYAMYKQLDID-*IEHVSRLIIKIGSRERGNGFAKLNSTLSAA 119
            V L+ Y+PHH A   QLD D  IE+ S  + K G  +  +   K   ++ +A
Sbjct: 1162 VRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPDSSSLKSRGSVHSA 1213


>BC101728-1|AAI01729.1| 1259|Homo sapiens transmembrane protein 1
            protein.
          Length = 1259

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 271  VGLYNYIPHHYAMYKQLDID-*IEHVSRLIIKIGSRERGNGFAKLNSTLSAA 119
            V L+ Y+PHH A   QLD D  IE+ S  + K G  +  +   K   ++ +A
Sbjct: 1162 VRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPDSSSLKSRGSVHSA 1213


>AB001523-1|BAA21099.1| 1259|Homo sapiens TMEM1 protein.
          Length = 1259

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 271  VGLYNYIPHHYAMYKQLDID-*IEHVSRLIIKIGSRERGNGFAKLNSTLSAA 119
            V L+ Y+PHH A   QLD D  IE+ S  + K G  +  +   K   ++ +A
Sbjct: 1162 VRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPDSSSLKSRGSVHSA 1213


>AB001517-1|BAA21136.1|  143|Homo sapiens TMEM1 protein protein.
          Length = 143

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 271 VGLYNYIPHHYAMYKQLDID-*IEHVSRLIIKIGSRERGNGFAKLNSTLSAA 119
           V L+ Y+PHH A   QLD D  IE+ S  + K G  +  +   K   ++ +A
Sbjct: 46  VRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPDSSSLKSRGSVHSA 97


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,836,190
Number of Sequences: 237096
Number of extensions: 1551019
Number of successful extensions: 2088
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2088
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)