Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o05
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical pr...    31   0.56 
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical
           protein R11H6.3 protein.
          Length = 387

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 340 HPPLG-HSACAPQVKLCQCPST*NTQHEFIRENRSCIVRLC 459
           +PPL   S  AP +KL    S  N +HE IR  ++   RLC
Sbjct: 110 NPPLRKRSGSAPSIKLITLASIWNLKHEHIRALKTTWARLC 150


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 400 T*NTQHEFIRENRSCIVRLCSAYLSP 477
           T N  ++FIR N+SC+ R CS   SP
Sbjct: 674 TGNNMNDFIRFNKSCVPRQCSHIGSP 699


>Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical
           protein B0284.1 protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 236 HVQTARYRLNRARISVNYQNRITGTWKRFR 147
           H QTA+  + +   ++ +QNRI G  K F+
Sbjct: 188 HKQTAQLEIEKENNAIEHQNRIHGMEKLFK 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,101,878
Number of Sequences: 27780
Number of extensions: 247666
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)