Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o02
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    30   1.4  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    30   1.4  
AF098989-2|AAK18954.3|  346|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC084153-1|AAK84596.1|  385|Caenorhabditis elegans Hypothetical ...    28   4.3  
U88308-10|AAB42326.2|  268|Caenorhabditis elegans Hypothetical p...    28   5.7  
AC084153-13|AAK84583.1|  123|Caenorhabditis elegans Hypothetical...    27   7.5  

>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 326  LTSLRSCRHCINFVFNDIPVWVEISLICYCSVLT 225
            LT L SC  C   + +D+P  +EI  + + SVLT
Sbjct: 1591 LTRLLSCEWCQLHLMSDVPAVIEILYVLHRSVLT 1624


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +1

Query: 223 GVKTEQ*QISDISTHTGMSLKTKLIQCLQDLKEVNYTDRINARKSDAKAENALNFIYQAG 402
           G+ ++  Q ++++T +   LK ++ +  Q   +    ++      +  AEN   F     
Sbjct: 577 GILSQVGQFTEMTTQSSAQLKERIRRICQIFPDAQILEKNMMVFVNQMAENDETFNLVKK 636

Query: 403 LKQTSFTDEEK-KSLGALLATAIKPIKVNIEGTACVYRTRLDNSV 534
           L   S+T EE  ++ GAL   AI   K++ +    V+R  +D  V
Sbjct: 637 LMSESYTSEENARTAGAL--QAIMEKKISSKAQQTVFRHFIDRIV 679


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +1

Query: 223 GVKTEQ*QISDISTHTGMSLKTKLIQCLQDLKEVNYTDRINARKSDAKAENALNFIYQAG 402
           G+ ++  Q ++++T +   LK ++ +  Q   +    ++      +  AEN   F     
Sbjct: 577 GILSQVGQFTEMTTQSSAQLKERIRRICQIFPDAQILEKNMMVFVNQMAENDETFNLVKK 636

Query: 403 LKQTSFTDEEK-KSLGALLATAIKPIKVNIEGTACVYRTRLDNSV 534
           L   S+T EE  ++ GAL   AI   K++ +    V+R  +D  V
Sbjct: 637 LMSESYTSEENARTAGAL--QAIMEKKISSKAQQTVFRHFIDRIV 679


>AF098989-2|AAK18954.3|  346|Caenorhabditis elegans Hypothetical
           protein F47G6.3 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 458 PPPSNPSKSTLKAQPVSTELDST 526
           PPPS P+K+   + PV T  DST
Sbjct: 87  PPPSTPAKTNQTSTPVPTSKDST 109


>AC084153-1|AAK84596.1|  385|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.7 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 470 NPSKSTLKAQPVSTELDSTIRSL*KDLQYNI 562
           NPS ST  + P  T ++ST   L   +QY I
Sbjct: 42  NPSTSTTSSNPAVTSIESTCSELTSTIQYVI 72


>U88308-10|AAB42326.2|  268|Caenorhabditis elegans Hypothetical
           protein C32E8.9 protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 295 IQCLQDLKEVNYTDRINARKSDAKAENALNFIYQAGLKQT 414
           +   ++ K+  Y D +   KS+ +AEN +N +  AGLK T
Sbjct: 187 VMSAEEAKDQGYVDYVY--KSEDEAENFINQVASAGLKVT 224


>AC084153-13|AAK84583.1|  123|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.1 protein.
          Length = 123

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 133 SSNEMCK*RLKVLHCLAHKIIFIVIVI 213
           +S   C  R+KVL C+A  II ++I++
Sbjct: 28  NSTNNCSNRMKVLCCIAVFIILVIIIV 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,052,387
Number of Sequences: 27780
Number of extensions: 215380
Number of successful extensions: 577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)