Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o01
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   186   9e-49
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   186   9e-49
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   2.7  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   3.5  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  186 bits (454), Expect = 9e-49
 Identities = 85/112 (75%), Positives = 94/112 (83%)
 Frame = +3

Query: 75  KNKPYPKSRFCRGVPDPKIRIFDLGKXRATVDXFPLCVHLVSDEYEQLSSEALEAGRICC 254
           KNKPYPKSR+ R VPD KIRIFDLG+ RA VD FPLC+HLVS+EYEQ++SEALEA RIC 
Sbjct: 13  KNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICA 72

Query: 255 NKYLVKNCGKDQFXIRMRLHPFHVIRIXKMLSCXGADRLXTGMRGAFGKPQG 410
           NKYLVK  GKD F +R+R HPFHV+RI KMLSC GADRL TGMR AFGKP G
Sbjct: 73  NKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  186 bits (454), Expect = 9e-49
 Identities = 85/112 (75%), Positives = 94/112 (83%)
 Frame = +3

Query: 75  KNKPYPKSRFCRGVPDPKIRIFDLGKXRATVDXFPLCVHLVSDEYEQLSSEALEAGRICC 254
           KNKPYPKSR+ R VPD KIRIFDLG+ RA VD FPLC+HLVS+EYEQ++SEALEA RIC 
Sbjct: 13  KNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICA 72

Query: 255 NKYLVKNCGKDQFXIRMRLHPFHVIRIXKMLSCXGADRLXTGMRGAFGKPQG 410
           NKYLVK  GKD F +R+R HPFHV+RI KMLSC GADRL TGMR AFGKP G
Sbjct: 73  NKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 96  SRFCRGVPDP-KIRIFDLGKXRATVDXFPLCVHLVSDEYEQLSSEALEAG 242
           ++FC  V +  KI   +  + RA +D   LC+  +S + E ++  +LE+G
Sbjct: 45  TKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 106 VGVYLIPRSVSSIWV 150
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,821
Number of Sequences: 5004
Number of extensions: 31208
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)