Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6o01
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 191 2e-49
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 185 1e-47
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 184 2e-47
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 32 0.16
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 5.9
03_05_0695 - 26851370-26851495,26852949-26853398 27 7.8
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 7.8
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 191 bits (466), Expect = 2e-49
Identities = 85/113 (75%), Positives = 95/113 (84%)
Frame = +3
Query: 75 KNKPYPKSRFCRGVPDPKIRIFDLGKXRATVDXFPLCVHLVSDEYEQLSSEALEAGRICC 254
KNKPYPKSR+CRGVPDPKIRI+D+G + VD FP CVHLVS E E +SSEALEA RI C
Sbjct: 13 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIAC 72
Query: 255 NKYLVKNCGKDQFXIRMRLHPFHVIRIXKMLSCXGADRLXTGMRGAFGKPQGT 413
NKY+ KN GKD F +R+R+HPFHV+RI KMLSC GADRL TGMRGAFGKPQGT
Sbjct: 73 NKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGT 125
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 185 bits (451), Expect = 1e-47
Identities = 82/113 (72%), Positives = 94/113 (83%)
Frame = +3
Query: 75 KNKPYPKSRFCRGVPDPKIRIFDLGKXRATVDXFPLCVHLVSDEYEQLSSEALEAGRICC 254
KNKPYPKSR+CRGVPDPKIRIFD+G+ + + D FPLCVHLVS E E +SSEALEA RI C
Sbjct: 320 KNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIAC 379
Query: 255 NKYLVKNCGKDQFXIRMRLHPFHVIRIXKMLSCXGADRLXTGMRGAFGKPQGT 413
NKY+ K+ GKD F +R+ HP+HV+RI KMLSC GADRL TGMRGAFGKP GT
Sbjct: 380 NKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGT 432
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 184 bits (448), Expect = 2e-47
Identities = 82/113 (72%), Positives = 94/113 (83%)
Frame = +3
Query: 75 KNKPYPKSRFCRGVPDPKIRIFDLGKXRATVDXFPLCVHLVSDEYEQLSSEALEAGRICC 254
KNKPYPKSR+CRGVPDPKIRI+D+G + VD F CVHLVS E E ++SEALEA RI C
Sbjct: 9 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIAC 68
Query: 255 NKYLVKNCGKDQFXIRMRLHPFHVIRIXKMLSCXGADRLXTGMRGAFGKPQGT 413
NKY+ K+ GKD F +R+R+HPFHV+RI KMLSC GADRL TGMRGAFGKPQGT
Sbjct: 69 NKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGT 121
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 32.3 bits (70), Expect = 0.16
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 162 TVDXFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 281
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 268 TRYLLQQIRPASKASELSCSYSSDTKCTHXGKXS 167
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>03_05_0695 - 26851370-26851495,26852949-26853398
Length = 191
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 321 GKGEVSCGXGTDPFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTXESXQRSLXSYPN 142
G+ CG G + + SRY+LP + L SAR + ++ S+P+
Sbjct: 67 GRSRCCCGAGGAAPATMVSALRGSRYLLPAQELLREAVSAAAASARGGDDDDEAVASFPH 126
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 174 SXQRSLXSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 64
S + + S GSW H D +++ DT+ CS+G
Sbjct: 760 SSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,548,249
Number of Sequences: 37544
Number of extensions: 228736
Number of successful extensions: 536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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