Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o01
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   196   4e-51
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   3.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   4.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   4.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   4.1  
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical p...    27   7.1  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  196 bits (479), Expect = 4e-51
 Identities = 88/112 (78%), Positives = 95/112 (84%)
 Frame = +3

Query: 75  KNKPYPKSRFCRGVPDPKIRIFDLGKXRATVDXFPLCVHLVSDEYEQLSSEALEAGRICC 254
           KNKPYPKSRFCRGVPD KIRIFDLG  RA VD FP CVH++S+E E LSSEALEA RIC 
Sbjct: 13  KNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICA 72

Query: 255 NKYLVKNCGKDQFXIRMRLHPFHVIRIXKMLSCXGADRLXTGMRGAFGKPQG 410
           NKY+VKNCGKD F +R+R HPFHV RI KMLSC GADRL TGMRGA+GKPQG
Sbjct: 73  NKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQG 124


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 403 GLPNAPRIPVWSLSAP 356
           G PN+P +P+W LS P
Sbjct: 232 GFPNSPLLPIWLLSYP 247


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 99  RFCRGVPDPKIRIFDLGKXRATVDXFPLCVHLVSDEYEQLSSEALEAGR 245
           R C  +   K  I D  K  A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 161 RSXLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 60
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 161 RSXLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 60
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 161 RSXLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 60
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 307 LMRIXN*SFPQFFTRYLLQQIRPASKASELSCSYSSDTKC 188
           +M I N    +  T  L+   +P  K  E +C++  DTKC
Sbjct: 410 MMDIENEEKHEAETAKLIVLNKPKIKCEETNCNFEKDTKC 449


>Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical
           protein C47A10.1 protein.
          Length = 1294

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 117 PDPKIRIFDLGKXRATVDXFPLCVHLV 197
           P PKI IF L +  +TVD   L V ++
Sbjct: 25  PPPKISIFQLYRYTSTVDRLMLAVGII 51


>Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical
           protein C47A10.1 protein.
          Length = 1294

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 117 PDPKIRIFDLGKXRATVDXFPLCVHLV 197
           P PKI IF L +  +TVD   L V ++
Sbjct: 25  PPPKISIFQLYRYTSTVDRLMLAVGII 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,427,204
Number of Sequences: 27780
Number of extensions: 180138
Number of successful extensions: 407
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)