Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6o01
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.59 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   7.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   7.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.59
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 90  DTVYFCSTGSISXAGAPX*SLQSDTTTS 7
           D  YFC  G +     P  S QSD+++S
Sbjct: 425 DKCYFCLDGKLPHDDQPPLSPQSDSSSS 452


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 13/55 (23%), Positives = 20/55 (36%)
 Frame = -3

Query: 344 HFXDADNVERVKSHADXELILSAVLYEVLIAADTSCLQSL*AQLFIFVGHQVHAQ 180
           HF       +  S      +   +   VL A +T   Q    +L   +GH  H+Q
Sbjct: 445 HFKQIARAVKFTSKLFGRALSRRIKATVLFATETGTSQMYAEKLSELLGHAFHSQ 499


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +1

Query: 31  RSPWGAGXRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRXERPL 168
           RSP      + + T+K   + N+G  G+ +    +  I +   R L
Sbjct: 83  RSPDSRDRSNTSNTSKTVILSNKGPEGIQINATELQKIKLEIHRDL 128


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +1

Query: 31  RSPWGAGXRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRXERPL 168
           RSP      + + T+K   + N+G  G+ +    +  I +   R L
Sbjct: 83  RSPDSRDRSNTSNTSKTIILSNKGPEGIQINATELQKIKLEIHRDL 128


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/28 (21%), Positives = 15/28 (53%)
 Frame = -3

Query: 191 VHAQXKVVNGRSXLTQIEDTDLGIRYTP 108
           ++   +++NG+     I +T   ++Y P
Sbjct: 39  MYVYEEIINGKKLTEIINETHENVKYLP 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,925
Number of Sequences: 438
Number of extensions: 2819
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)