Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6n16
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   1.8  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    27   2.4  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    26   4.2  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   7.3  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   9.6  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   9.6  

>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 567 ALACTVGSMCVGASVDLASSDFGVVASSFLASVEELVSLFLAASVWCSGTILVG 406
           A + +V S  +G S+   SS FG ++   L+S    VSL      W SGT L G
Sbjct: 91  AWSSSVPSKMLGVSLAAISSSFGEISFLHLSSRYHSVSL----PCWSSGTGLAG 140


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 570 NALACTVGSMCVGASVDLASSDFGVVASSFLASVEELVSLFLAASVWCSGTI 415
           N L+ +V ++   A VDL+  D+GVV+ S    V ++    L  S  CS T+
Sbjct: 236 NPLSSSVATIIHDAYVDLSIWDYGVVSPSSYNLVMDVHRYQLYESDECSKTL 287


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 136 MRNGYCSSQLGSRLFSRQCYAHG 68
           ++ G C +Q+GS+ + + C  HG
Sbjct: 8   LQAGQCGNQIGSQFWQQLCLEHG 30


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 84  CRLN-SLEPNWELQYPFLMISLKLQVNLKKTQQQF 185
           CRLN S +PN ++ +   ++ L  + ++KK +Q F
Sbjct: 190 CRLNHSCDPNCQIIFDGAIVQLVSKRDIKKDEQLF 224


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 276 VASVTFSASGFTFLSSVLVSTAEVVFCF 193
           +A   F  +GFTF+  +L+ T     CF
Sbjct: 109 MALYCFRWTGFTFIEGILICTGLTGLCF 136


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 537 VGASVDLASSDFGVVASSFLASVEELVSLFLA 442
           +GA+  L++S  G+   S L ++  L SLF+A
Sbjct: 42  IGATSSLSNSSLGLPEYSNLFAINNLKSLFVA 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,734
Number of Sequences: 5004
Number of extensions: 36816
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)