Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6n16
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    29   2.2  
AF100660-1|AAC68970.2|  442|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    27   8.9  

>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 637 SHESYSQETKGQYDSTNKAWSIKCSCLYSWFY 542
           S  S++ ET GQYD+  +     C C++   Y
Sbjct: 218 SESSFAGETNGQYDNNQEPHPSNCECVFHHDY 249


>AF100660-1|AAC68970.2|  442|Caenorhabditis elegans Hypothetical
           protein H35B03.1 protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 549 GSMCVGASVDLASSDFGVVASSFLASVEELVSLFLAASVW 430
           G++ VG   DL  ++       FLA+VE+ +SLF+    W
Sbjct: 36  GNIVVGVE-DLRDANLRFAVRYFLANVEKSISLFIVKQEW 74


>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 184 NCCCVFFRFTWSLRDIMRNGYCSSQL 107
           NC   FF+F W   +  RN  C ++L
Sbjct: 136 NCSFPFFQFGWVFMEAQRNETCGAKL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,493,767
Number of Sequences: 27780
Number of extensions: 218173
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)