Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6n14
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.81 
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    29   0.81 
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    28   1.4  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   4.3  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    26   5.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.5  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 49   KNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 153
            KN    +A+    IH LEE  EE K ++++L + L
Sbjct: 1351 KNFLRKEAEMTENIHSLEEGKEETKKEIAELSSRL 1385


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 28  QNLEITLKNLEEAKAKKIHEIHDLEEKCEELK 123
           QNL  TLKN+E+A+  +   I D+++   E++
Sbjct: 117 QNLSATLKNIEQARPTEEITIEDMKQAVPEIE 148


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 73  KKIHEI-HDLEEKCEELKSQMSDLKAHL 153
           K I EI +D EE+   L+SQ S LKAHL
Sbjct: 402 KFIEEIRNDYEERIHALESQNSALKAHL 429


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 249 LSYIGFTSNNYCYSKLCCFYTIRIYVS*FENWLTY 353
           L+ +G+  NN  +S L C +  + Y+  F +WL Y
Sbjct: 402 LATLGYLQNNV-FSFLNCLFEEKKYMKHFISWLNY 435


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 643 YHYSSNNIFYYVLCFPFM-KMHHR 575
           +HY ++ +F+Y + + F+ K+HHR
Sbjct: 149 WHYWAHRLFHYGIFYRFIHKVHHR 172


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 28   QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 153
            + +E   K +E+A  K         EKCE LK       AHL
Sbjct: 1394 EEVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHL 1435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,453
Number of Sequences: 5004
Number of extensions: 41482
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)