Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6n14
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693 39 0.003
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 34 0.12
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 33 0.16
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 29 3.4
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536... 28 5.9
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 28 5.9
04_01_0290 + 3843610-3843712,3844088-3846003 28 5.9
>03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693
Length = 126
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 1 YLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGKF 165
+ IGE+F + LE+ K ++ LE++ E + SQM++LK LYGKF
Sbjct: 63 FQIGEVFAHMPRDDVETRLEQMKEDAAKKLERLEQEKESIVSQMAELKKILYGKF 117
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 28 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 153
Q LE LKNLE +K ++ LE+ EEL+ ++S L+ L
Sbjct: 841 QQLEANLKNLESELEQKQSQVSALEQANEELREKISSLERQL 882
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 31 NLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 162
NL+ ++NLE AK +E+ +EKC L SQ+ KA L K
Sbjct: 548 NLQEAVENLEAAKTNMYNEVTVHQEKCTFLSSQLE--KAQLAEK 589
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 31 NLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDL 141
NL I LKN +EA + + + +LEE EE K+++S +
Sbjct: 412 NLSIQLKNTQEANIELVSILQELEETIEEQKAEISKI 448
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = +1
Query: 7 IGEIFICQNLEITLKN-LEEAKAK--KIHEIH-DLEEKCEELKSQMSDL 141
+ +I Q+ + LK+ L+EAK + K+ E+H + E+CEELK+Q + L
Sbjct: 1115 VQKIMSLQDEVLKLKSSLDEAKFERGKLEELHRSVTEECEELKAQKAML 1163
>08_02_1453 -
27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 52 NLEEAKAKKIHEIHDLEEKCEELKSQMSDLK 144
N E +A+ + +IHDL+E E +SQM L+
Sbjct: 173 NSEAERAQHLKQIHDLQEHLREKESQMLALE 203
>11_06_0762 +
27043460-27044319,27052096-27052912,27052992-27053649,
27053698-27053934,27054091-27054161,27054346-27054441
Length = 912
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 37 EITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAH 150
E+ K LEE + K I E+H+ ++L++Q+ + H
Sbjct: 873 EMEAKQLEERRDKFIQELHEENLLLDDLQAQLMKISEH 910
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 28 QNLEITLKNLEEAKAKKIHEIHDL----EEKCEELKSQMSDLKAHLYGK 162
Q +E+T K +EE KI E+ L +K EE+++ S LK+ L+ K
Sbjct: 329 QKIELTAKQMEEHLTTKIKEVESLLVQSNKKIEEVEA-ASLLKSQLWNK 376
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 37 EITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKA 147
E+ K ++ KAK + E DL+ + EE++ M +K+
Sbjct: 138 EVAAKAFDDEKAKMMMESVDLKSRLEEIQGNMDMIKS 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,337,707
Number of Sequences: 37544
Number of extensions: 186184
Number of successful extensions: 431
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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