Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6n14
(671 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41816-1|AAB17063.1| 130|Homo sapiens C-1 protein. 53 1e-06
BC010953-1|AAH10953.1| 134|Homo sapiens prefoldin subunit 4 pro... 53 1e-06
AL133335-1|CAI19316.1| 134|Homo sapiens prefoldin subunit 4 pro... 53 1e-06
U49356-1|AAA90924.1| 2285|Homo sapiens DNA polymerase epsilon ca... 37 0.076
S60080-1|AAA15448.1| 2257|Homo sapiens DNA polymerase epsilon ca... 37 0.076
L09561-1|AAC19148.1| 2286|Homo sapiens DNA polymerase epsilon, c... 37 0.076
AY273166-1|AAP12650.1| 2265|Homo sapiens polymerase (DNA directe... 37 0.076
AF127975-3|AAD44692.1| 2243|Homo sapiens DNA polymerase epsilon ... 37 0.076
AF127975-2|AAD44691.1| 2286|Homo sapiens DNA polymerase epsilon ... 37 0.076
AF127975-1|AAD44690.1| 2297|Homo sapiens DNA polymerase epsilon ... 37 0.076
AB209902-1|BAD93139.1| 983|Homo sapiens DNA polymerase epsilon ... 37 0.076
BC131515-1|AAI31516.1| 632|Homo sapiens GOLGA6 protein protein. 33 0.70
AF266285-1|AAF72535.1| 693|Homo sapiens golgin-like protein pro... 33 0.70
AF263742-1|AAF72196.1| 693|Homo sapiens golgin-like protein pro... 33 0.70
D86970-1|BAA13206.2| 2067|Homo sapiens KIAA0216 protein. 31 5.0
BC039612-1|AAH39612.1| 2002|Homo sapiens MYO18A protein protein. 31 5.0
AY703984-1|AAV80770.1| 1581|Homo sapiens SP-A receptor subunit S... 31 5.0
AB177860-1|BAD66838.1| 1715|Homo sapiens KIAA0216 splice variant... 31 5.0
AB177858-1|BAD66836.1| 2046|Homo sapiens KIAA0216 splice variant... 31 5.0
>U41816-1|AAB17063.1| 130|Homo sapiens C-1 protein.
Length = 130
Score = 52.8 bits (121), Expect = 1e-06
Identities = 26/58 (44%), Positives = 36/58 (62%)
Frame = +1
Query: 1 YLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGKFGSH 174
Y IG++FI + E T + LEEAK EI LE + E ++ ++DLK LY KFGS+
Sbjct: 65 YQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSN 122
>BC010953-1|AAH10953.1| 134|Homo sapiens prefoldin subunit 4
protein.
Length = 134
Score = 52.8 bits (121), Expect = 1e-06
Identities = 26/58 (44%), Positives = 36/58 (62%)
Frame = +1
Query: 1 YLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGKFGSH 174
Y IG++FI + E T + LEEAK EI LE + E ++ ++DLK LY KFGS+
Sbjct: 69 YQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSN 126
>AL133335-1|CAI19316.1| 134|Homo sapiens prefoldin subunit 4
protein.
Length = 134
Score = 52.8 bits (121), Expect = 1e-06
Identities = 26/58 (44%), Positives = 36/58 (62%)
Frame = +1
Query: 1 YLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGKFGSH 174
Y IG++FI + E T + LEEAK EI LE + E ++ ++DLK LY KFGS+
Sbjct: 69 YQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSN 126
>U49356-1|AAA90924.1| 2285|Homo sapiens DNA polymerase epsilon
catalytic subunit protein.
Length = 2285
Score = 36.7 bits (81), Expect = 0.076
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 FICQNLEITLKN-LEEAKAKKIHEIHDLEEKCEELKSQMSDLK 144
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 568 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 610
>S60080-1|AAA15448.1| 2257|Homo sapiens DNA polymerase epsilon
catalytic subunit protein.
Length = 2257
Score = 36.7 bits (81), Expect = 0.076
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 FICQNLEITLKN-LEEAKAKKIHEIHDLEEKCEELKSQMSDLK 144
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 540 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 582
>L09561-1|AAC19148.1| 2286|Homo sapiens DNA polymerase epsilon,
catalytic polypeptide protein.
Length = 2286
Score = 36.7 bits (81), Expect = 0.076
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 FICQNLEITLKN-LEEAKAKKIHEIHDLEEKCEELKSQMSDLK 144
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 569 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 611
>AY273166-1|AAP12650.1| 2265|Homo sapiens polymerase (DNA directed),
epsilon protein.
Length = 2265
Score = 36.7 bits (81), Expect = 0.076
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 FICQNLEITLKN-LEEAKAKKIHEIHDLEEKCEELKSQMSDLK 144
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 548 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 590
>AF127975-3|AAD44692.1| 2243|Homo sapiens DNA polymerase epsilon
catalytic subunit protein isoform c protein.
Length = 2243
Score = 36.7 bits (81), Expect = 0.076
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 FICQNLEITLKN-LEEAKAKKIHEIHDLEEKCEELKSQMSDLK 144
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 526 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 568
>AF127975-2|AAD44691.1| 2286|Homo sapiens DNA polymerase epsilon
catalytic subunit protein isoform b protein.
Length = 2286
Score = 36.7 bits (81), Expect = 0.076
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 FICQNLEITLKN-LEEAKAKKIHEIHDLEEKCEELKSQMSDLK 144
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 569 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 611
>AF127975-1|AAD44690.1| 2297|Homo sapiens DNA polymerase epsilon
catalytic subunit protein isoform a protein.
Length = 2297
Score = 36.7 bits (81), Expect = 0.076
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 FICQNLEITLKN-LEEAKAKKIHEIHDLEEKCEELKSQMSDLK 144
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 580 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 622
>AB209902-1|BAD93139.1| 983|Homo sapiens DNA polymerase epsilon
catalytic subunit variant protein.
Length = 983
Score = 36.7 bits (81), Expect = 0.076
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 FICQNLEITLKN-LEEAKAKKIHEIHDLEEKCEELKSQMSDLK 144
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 377 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 419
>BC131515-1|AAI31516.1| 632|Homo sapiens GOLGA6 protein protein.
Length = 632
Score = 33.5 bits (73), Expect = 0.70
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 34 LEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSD 138
+ + + L+E K + IH I +LE ELK+QM++
Sbjct: 250 MSVEARTLKEEKKRDIHRIQELERSLSELKNQMAE 284
>AF266285-1|AAF72535.1| 693|Homo sapiens golgin-like protein
protein.
Length = 693
Score = 33.5 bits (73), Expect = 0.70
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 34 LEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSD 138
+ + + L+E K + IH I +LE ELK+QM++
Sbjct: 250 MSVEARTLKEEKKRDIHRIQELERSLSELKNQMAE 284
>AF263742-1|AAF72196.1| 693|Homo sapiens golgin-like protein
protein.
Length = 693
Score = 33.5 bits (73), Expect = 0.70
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 34 LEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSD 138
+ + + L+E K + IH I +LE ELK+QM++
Sbjct: 250 MSVEARTLKEEKKRDIHRIQELERSLSELKNQMAE 284
>D86970-1|BAA13206.2| 2067|Homo sapiens KIAA0216 protein.
Length = 2067
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 28 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 162
+ LE L +L+ + + L++KC+ L +++ D K HL G+
Sbjct: 1418 RQLERRLGDLQADSEESQRALQQLKKKCQRLTAELQDTKLHLEGQ 1462
>BC039612-1|AAH39612.1| 2002|Homo sapiens MYO18A protein protein.
Length = 2002
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 28 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 162
+ LE L +L+ + + L++KC+ L +++ D K HL G+
Sbjct: 1405 RQLERRLGDLQADSEESQRALQQLKKKCQRLTAELQDTKLHLEGQ 1449
>AY703984-1|AAV80770.1| 1581|Homo sapiens SP-A receptor subunit
SP-R210 alphaS protein.
Length = 1581
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 28 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 162
+ LE L +L+ + + L++KC+ L +++ D K HL G+
Sbjct: 947 RQLERRLGDLQADSEESQRALQQLKKKCQRLTAELQDTKLHLEGQ 991
>AB177860-1|BAD66838.1| 1715|Homo sapiens KIAA0216 splice variant 2
protein.
Length = 1715
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 28 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 162
+ LE L +L+ + + L++KC+ L +++ D K HL G+
Sbjct: 1081 RQLERRLGDLQADSEESQRALQQLKKKCQRLTAELQDTKLHLEGQ 1125
>AB177858-1|BAD66836.1| 2046|Homo sapiens KIAA0216 splice variant 1
protein.
Length = 2046
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 28 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 162
+ LE L +L+ + + L++KC+ L +++ D K HL G+
Sbjct: 1397 RQLERRLGDLQADSEESQRALQQLKKKCQRLTAELQDTKLHLEGQ 1441
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,134,078
Number of Sequences: 237096
Number of extensions: 1237150
Number of successful extensions: 6674
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6668
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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