Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6n14
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49129-1|CAA88962.1| 262|Caenorhabditis elegans Hypothetical pr... 33 0.18
AL117204-9|CAB55124.1| 358|Caenorhabditis elegans Hypothetical ... 30 1.7
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 3.0
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 29 3.0
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 28 5.3
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 28 6.9
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 28 6.9
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 28 6.9
Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical pr... 27 9.2
U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z49129-1|CAA88962.1| 262|Caenorhabditis elegans Hypothetical
protein T05B9.1 protein.
Length = 262
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = +1
Query: 37 EITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 153
E+T L +AK++K LEE EELKSQ DLKA L
Sbjct: 44 ELTQDKLNDAKSRK-----KLEESMEELKSQNLDLKAQL 77
>AL117204-9|CAB55124.1| 358|Caenorhabditis elegans Hypothetical
protein Y116A8C.18 protein.
Length = 358
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +1
Query: 28 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 162
++L T+K+LE K ++ H+ + ++ EELK ++ +L+A Y +
Sbjct: 100 KHLLTTMKSLETEKMEQEHKTKIMNKEVEELKIRVKELEATDYSE 144
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 25 CQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDL 141
CQ+++++L+ +E K K H+I L+++ + +S L
Sbjct: 970 CQDVDLSLRKVEAEKNAKEHQIRALQDEMRQQDENISKL 1008
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 25 CQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDL 141
CQ+++++L+ +E K K H+I L+++ + +S L
Sbjct: 970 CQDVDLSLRKVEAEKNAKEHQIRALQDEMRQQDENISKL 1008
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 25 CQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDL 141
CQ+++++L+ +E K K H+I L+++ + +S L
Sbjct: 970 CQDVDLSLRKVEAEKNAKEHQIRALQDEMRQQDENISKL 1008
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 28 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSD 138
+NLE L L++A K + E LEEK E L +Q+ D
Sbjct: 980 RNLEERLVELQDAYDKLLKEKRLLEEKVEGLTTQLLD 1016
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 49 KNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 153
K LEE+ AK + E L E K+Q+SD + L
Sbjct: 880 KELEESSAKLVEEKTSLFTNLESTKTQLSDAEERL 914
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 49 KNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 153
K LEE+ AK + E L E K+Q+SD + L
Sbjct: 880 KELEESSAKLVEEKTSLFTNLESTKTQLSDAEERL 914
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 49 KNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 153
K LEE+ AK + E L E K+Q+SD + L
Sbjct: 883 KELEESSAKLVEEKTSLFTNLESTKTQLSDAEERL 917
>Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical
protein T14D7.2 protein.
Length = 734
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -2
Query: 640 HYSSNNIFYYVLCFPFMKM 584
HY S+N F++++ F F+K+
Sbjct: 36 HYFSSNFFFFIIVFHFIKL 54
>U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical
protein F47B7.2b protein.
Length = 678
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 426 YFVLYLRTISLNLISLYCNFKLH*SRSANFRIKKHKFLLC 307
Y+ ++L I + LI +YC ++ + S+ K+ F LC
Sbjct: 627 YYFIFLSLIGVALIVIYCKYRKNRSKFWKTFYYKNDFKLC 666
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,511,551
Number of Sequences: 27780
Number of extensions: 223604
Number of successful extensions: 547
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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