Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6n11
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.20 
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    26   5.8  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   7.7  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 345 YWLFCLFYFYITLRIINHKHNLMI*VHLSDYNIISFSSLFFFATM 479
           YW F  F+F+   R    + ++ I +H  D N++ F   FF+ ++
Sbjct: 76  YWFFFFFFFFSHCR----RFHIAIFIHPYDSNVVPFFCFFFYFSL 116


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 378 TLRIINHKHNLMI*VHLSDYNIISFSSLFFF 470
           T+ +++  H +      S+YNI+  SSLFFF
Sbjct: 71  TVSLLSSAHKMNCCNFYSNYNILLVSSLFFF 101


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 345 YWLFCLFYFYITLRIINHKH 404
           +W+F  F FY   +I+N+ H
Sbjct: 30  HWIFARFKFYPLNKIVNYNH 49


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +1

Query: 553 YPLKFEITLKVVEMYL------KSCLLIALSCTEKWINKKLSPL 666
           YP K   T K   +YL      +  L +AL   E WINK + PL
Sbjct: 205 YPNKALATDKDPPLYLHIVSHNRKDLTVALQEIESWINKDMGPL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,205
Number of Sequences: 5004
Number of extensions: 39627
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)