Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6n11
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52003-3|AAG00055.2|  115|Caenorhabditis elegans Hypothetical pr...    31   0.76 
AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81118-10|CAB61029.1|  657|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z81118-1|CAB03329.1|  478|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z77668-2|CAB61021.1|  657|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z50016-2|CAC42346.1|  487|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U14524-1|AAA50785.1|  461|Caenorhabditis elegans avermectin-sens...    29   3.1  
AJ000538-1|CAA04171.1|  657|Caenorhabditis elegans GluClalpha2A ...    29   3.1  
AJ000537-1|CAA04170.1|  478|Caenorhabditis elegans GluClalpha2B ...    29   3.1  
AF151640-1|AAD42382.1|  487|Caenorhabditis elegans ionotropic GA...    29   3.1  
U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>U52003-3|AAG00055.2|  115|Caenorhabditis elegans Hypothetical
           protein ZK381.3 protein.
          Length = 115

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 339 VCYWLFCLFYFYITLRIINHKHNLMI*VHLSDYNI 443
           +C+W      F +TL+I+  +H L++   L+DY++
Sbjct: 77  LCFWKLGYVDFGVTLKIVAQEHYLLVSTALTDYHL 111


>AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical
           protein Y39C12A.3 protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +3

Query: 351 LFCLFYFYITLRIINHKHNLMI*VHLSDYNIISFSSLF 464
           L+ +F  Y+T+R+ ++K+N+ I +H + Y    FSS +
Sbjct: 33  LYYIFNLYVTIRVKHYKNNIKI-LHQAIYATCPFSSAY 69


>Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical
           protein F11A5.10 protein.
          Length = 461

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 559 LKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSP 663
           LK E +  ++++Y+ SC+L+ +S    W ++   P
Sbjct: 270 LKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIP 304


>Z81118-10|CAB61029.1|  657|Caenorhabditis elegans Hypothetical
           protein R11G10.1a protein.
          Length = 657

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +1

Query: 544 KLIYPLKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSP 663
           + I  L+ + +  ++++Y+ SC+L+ +S    WI++   P
Sbjct: 457 RTIIQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVP 496


>Z81118-1|CAB03329.1|  478|Caenorhabditis elegans Hypothetical
           protein R11G10.1b protein.
          Length = 478

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +1

Query: 544 KLIYPLKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSP 663
           + I  L+ + +  ++++Y+ SC+L+ +S    WI++   P
Sbjct: 278 RTIIQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVP 317


>Z77668-2|CAB61021.1|  657|Caenorhabditis elegans Hypothetical
           protein R11G10.1a protein.
          Length = 657

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +1

Query: 544 KLIYPLKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSP 663
           + I  L+ + +  ++++Y+ SC+L+ +S    WI++   P
Sbjct: 457 RTIIQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVP 496


>Z50016-2|CAC42346.1|  487|Caenorhabditis elegans Hypothetical
           protein T21C12.1b protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 505 H*NILSSEARFRFKLIYPLKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSP 663
           H   LSS    R    +  K  I   ++++YL S L++ +S    W+++  +P
Sbjct: 225 HTQKLSSGEYSRLCWFFLFKRNIGFYIIQIYLPSVLIVVISWVSFWLSRDATP 277


>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
           protein T21C12.1a protein.
          Length = 1106

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 505 H*NILSSEARFRFKLIYPLKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSP 663
           H   LSS    R    +  K  I   ++++YL S L++ +S    W+++  +P
Sbjct: 237 HTQKLSSGEYSRLCWFFLFKRNIGFYIIQIYLPSVLIVVISWVSFWLSRDATP 289


>U14524-1|AAA50785.1|  461|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl alpha protein.
          Length = 461

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 559 LKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSP 663
           LK E +  ++++Y+ SC+L+ +S    W ++   P
Sbjct: 270 LKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIP 304


>AJ000538-1|CAA04171.1|  657|Caenorhabditis elegans GluClalpha2A
           protein protein.
          Length = 657

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +1

Query: 544 KLIYPLKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSP 663
           + I  L+ + +  ++++Y+ SC+L+ +S    WI++   P
Sbjct: 457 RTIIQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVP 496


>AJ000537-1|CAA04170.1|  478|Caenorhabditis elegans GluClalpha2B
           protein protein.
          Length = 478

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +1

Query: 544 KLIYPLKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSP 663
           + I  L+ + +  ++++Y+ SC+L+ +S    WI++   P
Sbjct: 278 RTIIQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVP 317


>AF151640-1|AAD42382.1|  487|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49A protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 505 H*NILSSEARFRFKLIYPLKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSP 663
           H   LSS    R    +  K  I   ++++YL S L++ +S    W+++  +P
Sbjct: 225 HTQKLSSGEYSRLCWFFLFKRNIGFYIIQIYLPSVLIVVISWVSFWLSRDATP 277


>U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical
           protein C50E3.7 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 541 FKLIYPLKFEITLKVVEMYLKSCLLIALSCTEKWINKKLSPLAL 672
           FK++    F ++L+V    L  C++I +S TE  ++K LS  +L
Sbjct: 115 FKILLIQCFVVSLRVFLHILTICIIIYVSNTESSVSKFLSQCSL 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,402,104
Number of Sequences: 27780
Number of extensions: 214746
Number of successful extensions: 422
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)