Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6n10
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    49   4e-07
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    28   0.86 
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    27   2.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   3.5  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    26   3.5  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   4.6  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.0  

>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
 Frame = +2

Query: 221 LANIRDNPGSKITQKR-GRGQHGG--DKHGAGNKGSGQRQ-NYMRLGYETGNNPFYLRIP 388
           + N  +N  +  ++KR GRG   G     G G+KGSGQR+   ++ G+E G  P     P
Sbjct: 1   MLNDLNNSANYQSKKRVGRGPASGLGKTSGRGHKGSGQRRGRRIKPGFEGGQTPITKLFP 60

Query: 389 HENYYRGHHLKREYPPMTLLELQKLIDRNRVDISKPIDIASLIKS 523
              +  G HLK+    + L  +Q+ IDR R+D SK I +  L+ S
Sbjct: 61  KVGHSTG-HLKKPL-RLGLGRVQEWIDRGRLDASKTITMKDLLDS 103


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 17/80 (21%), Positives = 35/80 (43%)
 Frame = +2

Query: 131 STFILKFLSMGSRQITEKSLSMLRSLPRITLANIRDNPGSKITQKRGRGQHGGDKHGAGN 310
           ST + +F  +   Q + +SL + + +P      +  +    +T KR +    G    A  
Sbjct: 44  STAVSQFSLLSLSQRSFQSLKINKGIPEKHKIPLISSKQFSVTSKRSQNGSSGSNSDANG 103

Query: 311 KGSGQRQNYMRLGYETGNNP 370
           + +GQ+ +  +     GN+P
Sbjct: 104 RKNGQKNDDSKKKGLNGNDP 123


>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 434 PMTLLELQKLIDRNRVDISKPIDIASLIK 520
           P  L+   +LID+NR DI+K    A+LI+
Sbjct: 148 PKFLIMFPELIDKNREDIAKAAAEAALIE 176


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 239  NPGSKITQKRGRGQHGGDKHGAGNKGSGQRQNYMRLGYE 355
            N G  I        H    H  G+KG   R NYM + YE
Sbjct: 1720 NYGFSIIDIVKHNPHSITIHFGGSKGKKIRDNYMAMAYE 1758


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 407 GHHLKREYPPMTLLELQKLIDRNRVDISKPIDIASLIKSGL 529
           GH++ ++Y P+ L E + L  +N+   S    +  L KS L
Sbjct: 51  GHYVSKDYQPINLSEWKNLTSQNQGAYSLDALVDFLAKSPL 91


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 146 KFLSMGSRQITEKSLSMLRSLPRITLANIRDNPGSKITQKRGRGQHG 286
           + LSM S+Q T  S S L     + LAN+   P S  T+K      G
Sbjct: 488 RLLSMLSQQDTTPSSSTLSKEANVQLANLFLTPNSLETKKFSDNSQG 534


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 383 IPHENYYRGHHLKREYPPMTLLELQKLIDRNRVDISKP 496
           I H +Y+    + R Y P+T+ E  + I + R    KP
Sbjct: 810 IKHNSYFLLPTVSRHYRPITIFEAIRKILKKREFAKKP 847


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,145
Number of Sequences: 5004
Number of extensions: 46090
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)