Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6n10
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.54 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.2  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   2.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   3.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.7  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 356 TGNNPFYLRIPHENYYRGHHLK 421
           TG  PF     H+ + R HHLK
Sbjct: 5   TGEKPFECPECHKRFTRDHHLK 26


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 573 VKLTPKCFW--SGFNVYNPDFIKLAISMGLDM 484
           +K+   C++  SG  +  PD   L + MGL M
Sbjct: 317 IKILGDCYYCISGAPIERPDHAVLCVYMGLSM 348


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 119 NLFISTFILKFLSMGSRQITEKSLSMLRSL 208
           N F+S   +   ++G + +TE++L  LR L
Sbjct: 144 NEFLSILPIFLYALGEQPLTEQNLEELRDL 173


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 119 NLFISTFILKFLSMGSRQITEKSLSMLRSL 208
           N F+S   +   ++G + +TE++L  LR L
Sbjct: 182 NEFLSILPIFLYALGEQPLTEQNLEELRDL 211


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 407 LYSNSHEEYEDKMGCFQ 357
           +Y ++ EE   K+GCF+
Sbjct: 40  MYESNSEEQMKKLGCFE 56


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 434 PMTLLELQKLIDRNRVDISKPIDIA 508
           P T LE+QK I + + D+ + I  A
Sbjct: 157 PQTYLEIQKXIKKAKEDVIEVIQKA 181


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 462 NFCNSKSVIGGYSLFK 415
           ++CNSK+  G YS  K
Sbjct: 217 DYCNSKTNTGEYSCLK 232


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 462 NFCNSKSVIGGYSLFK 415
           ++CNSK+  G YS  K
Sbjct: 217 DYCNSKTNTGEYSCLK 232


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +2

Query: 245 GSKITQKRGRGQHGGDKHGAGNKGSGQRQN 334
           G++    +  G    D    GN+ +G +QN
Sbjct: 472 GNRQNDNKQNGNRQNDNKQNGNRQNGNKQN 501


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,463
Number of Sequences: 438
Number of extensions: 3415
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)