Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6n04
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical p...    31   0.68 
Z93383-13|CAI58636.1|  206|Caenorhabditis elegans Hypothetical p...    29   2.7  

>Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.7a protein.
          Length = 283

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 104 MCCHFRNLFYAIYCNKRIYFNYLI*YIYSLNLTKVDSTK*LLL*NSYYTKSIYNFNKY 277
           +CC    L YA++C+KRI F   +   Y   +  V  T  + + N  Y   I  FN+Y
Sbjct: 19  LCCTMIYLLYAVFCSKRIAFRPSLSIFYCRFIIDVFLTLSVSI-NKAYFLVISLFNQY 75


>Z93383-13|CAI58636.1|  206|Caenorhabditis elegans Hypothetical
           protein F54B8.7b protein.
          Length = 206

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 104 MCCHFRNLFYAIYCNKRIYF 163
           +CC    L YA++C+KRI F
Sbjct: 19  LCCTMIYLLYAVFCSKRIAF 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,694
Number of Sequences: 27780
Number of extensions: 241121
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)