Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6n01
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 31 0.14
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 28 1.3
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 27 3.0
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.0
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 26 3.9
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 26 5.2
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 25 6.9
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 25 6.9
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 9.1
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 75 LCNTMAVKDLKVCDDEECSKGSHETCPLKSENVREIKKLTFKQRLKLIKDNTTVE 239
L N + + L C +E S SHE P S+ ++++ K + + ++TTV+
Sbjct: 556 LANEVDIDALSSCMEEFVSSFSHELTPFASQLAKQLRNTFVKLMQETMDESTTVD 610
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/69 (20%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 264 PSVLASLAV---QNLSLDKACRVNL-NYSDEVCTALTLRQTENYTEAEENVQRLIASVQV 431
P +L L + Q++ + +NL ++E+C +L + ++ +V+R+ A +++
Sbjct: 429 PVILPDLEIPGSQSIVENMRAVINLAKLTNEICDSLYWNPSPSFESQVNSVRRIYARLEL 488
Query: 432 WKNVVQTAI 458
WK+ + +++
Sbjct: 489 WKSDLHSSV 497
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 177 EIKKLTFKQRLKLIKDNTTVEPIMA-CYVMP-SVLASLAVQNLSLDKACRVNLNYSDEVC 350
EI T + L + N +EPI + C ++ S L V L+ +NY+D+
Sbjct: 144 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGL 203
Query: 351 TALTLRQTENYTEAEENVQRLIA 419
AL + + +A N+Q +A
Sbjct: 204 AALIMTAEGDMRQAVNNLQSTVA 226
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = -3
Query: 473 YHTYWYSRLHNVFPNLDTRYQSLYVFFRLRVV 378
+ YW+ ++H + P D Y+ V L ++
Sbjct: 593 WQEYWHCKIHKLLPKEDASYEQKVVLLTLSLL 624
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 183 LFRERFLISTGMFREILSSTLHRHKLSGL 97
+F RF ++T R I + H H LSGL
Sbjct: 138 IFVHRFSLATMPLRNIFKNCAHYHLLSGL 166
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 531 PIVGEFLSCLGFIVNTYFFYEL 596
PI+G F+ CLGF FY L
Sbjct: 82 PIIGFFVECLGFFNLFKVFYPL 103
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +3
Query: 54 YRPQKYL--LCNTMAVKDLKVCDDE 122
Y PQ + LCNT+ ++L V DDE
Sbjct: 137 YSPQSKIVVLCNTLNFEELDVYDDE 161
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = -1
Query: 559 KQDKNSPTIGSKMHAFLLPVLSLHAPTNNITHTGIAVCTTFFQTWTLAISLCTFSSASV 383
++ K+ P + K++AF L + + + H I T + LC F SA V
Sbjct: 117 RRRKSIPNLSIKLYAFQLFRALAYLHSTGVCHRDIKPQNLLVDYKTGILKLCDFGSAKV 175
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 96 KDLKVCDDEECSKGSHETCPLKSENVREIKKLTFKQRLKL 215
++LK DDEE T K E + + KL + +LKL
Sbjct: 399 ENLKSYDDEEAILSEKNTDMKKLERIEGLVKLVDEYKLKL 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,984
Number of Sequences: 5004
Number of extensions: 57349
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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