Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6m23
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 42 6e-05
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 31 0.15
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 28 1.4
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 1.8
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 2.4
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 26 5.5
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 25 9.5
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 9.5
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 25 9.5
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 42.3 bits (95), Expect = 6e-05
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
Frame = +1
Query: 292 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXXXXX 471
IPPVTR TT+ L+SP L + L++R+ Q W
Sbjct: 16 IPPVTRYILLGTAATTILTLCQLLSPSMLVLHYPLVVRQKQ-WYRLFTNYLYAGTGFDFI 74
Query: 472 XXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNL-LFLGQAFTIMIVYV 648
+ F Y+Y LE F +++ + LL+ + L L Q+ I Y
Sbjct: 75 MNIYFFYQYSTYLENFVFARNAKKYIIYLVKVALLIDAFSLISGLGSALNQSLAAAIAYN 134
Query: 649 WS 654
WS
Sbjct: 135 WS 136
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 31.1 bits (67), Expect = 0.15
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
Frame = +1
Query: 295 PPVTRAYTTACVVTTLAVQLDLVSPFQLYFNP-NLILRKYQLWRXXXXXXXXXXXXXXXX 471
PPVTR + TTLAV ++ F LY P L L Y
Sbjct: 12 PPVTRYIVLGTLFTTLAVYWRAITTF-LYVGPFGLELILY-------------------- 50
Query: 472 XXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVW 651
+ F R+ MLE S +T F+ + +++ ++F + F F+ ++Y+W
Sbjct: 51 --LSFLLRFMSMLERSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIW 108
Query: 652 S 654
S
Sbjct: 109 S 109
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 87 CLQSDLNSTIF-NYDENIKHIINLCDL 10
C+ + I+ NYDE K +NLCDL
Sbjct: 291 CVHKQKGNVIWLNYDEPTKDFLNLCDL 317
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 238 LYYLDTMAYQTLLQEYM----LIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFN 387
L Y + Y TLL+ + I P+T+A AC + ++ + +S F L+ N
Sbjct: 487 LSYQSSFDYDTLLRIFQKNGNFITPITQALLNACEIDSIYQSWEDISNFVLFDN 540
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 528 IENSRFCCHVHIWRLINDYMCFLC*SIVFRASVYNH 635
+E CCH++ L + CFLC + + + Y H
Sbjct: 375 VERIDGCCHMNC--LCGTHFCFLCGAYLMEQNPYKH 408
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 259 AYQTLLQEYMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPN 393
A Q + + + T + AC +++ L+ P LYF+PN
Sbjct: 198 AVQAHVMNQVRLGRATLLHARACYQKIGDIRMYLIDPHDLYFSPN 242
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 75 DLNSTIFNYDENIKHII 25
DLNS ++ Y+ +I H+I
Sbjct: 473 DLNSLLYKYETDISHVI 489
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -3
Query: 653 DHTYTIMIVNACPKNNRLTKKAHIIINKPPNMNMTTKSAVLDLKEP-SSSILQYLYVNI 480
++TY I+ AC + + K HI K + A++ ++ P ++S++Q L N+
Sbjct: 127 ENTYYIVTNAACSEKDEANLKKHIENWKGVELERVQGRALIAIQGPETASVVQKLIPNV 185
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 310 PW*LVVLAYTLGEGFDT 260
PW + VL + G GFDT
Sbjct: 202 PWKIYVLGFVFGLGFDT 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,394
Number of Sequences: 5004
Number of extensions: 53769
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -