Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6m23
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...   155   2e-38
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...   155   2e-38
Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical pr...    56   3e-08
AF002196-3|AAP68957.1|  916|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF002196-1|AAP68955.1|  913|Caenorhabditis elegans Hypothetical ...    29   2.9  
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z92806-2|CAB07257.1|  303|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score =  155 bits (377), Expect = 2e-38
 Identities = 72/121 (59%), Positives = 84/121 (69%)
 Frame = +1

Query: 292 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXXXXX 471
           +PPVTR YT ACV+ T AV L+ V+PF LYFN  LI+RKYQ WR                
Sbjct: 11  MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL 70

Query: 472 XXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVW 651
             +IFTYRYC MLEEGSFR R ADFV MF+FG +LMI+   FV +LFLGQAFTIM+VY+W
Sbjct: 71  FNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLVYIW 130

Query: 652 S 654
           S
Sbjct: 131 S 131


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score =  155 bits (377), Expect = 2e-38
 Identities = 72/121 (59%), Positives = 84/121 (69%)
 Frame = +1

Query: 292 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXXXXX 471
           +PPVTR YT ACV+ T AV L+ V+PF LYFN  LI+RKYQ WR                
Sbjct: 11  MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL 70

Query: 472 XXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVW 651
             +IFTYRYC MLEEGSFR R ADFV MF+FG +LMI+   FV +LFLGQAFTIM+VY+W
Sbjct: 71  FNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLVYIW 130

Query: 652 S 654
           S
Sbjct: 131 S 131


>Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical
           protein F25D7.1 protein.
          Length = 245

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
 Frame = +1

Query: 274 LQEYML-IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXX 450
           L+ ++L IP VTR +  A  +  L  +   ++   ++   +L++ K+Q WR         
Sbjct: 3   LENFLLGIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYYP 62

Query: 451 XXXXXXXXXVI---FTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQ 621
                    ++   F Y Y + LE  ++R R+AD++ M IF           +++ FL +
Sbjct: 63  VTPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDIYFLLE 122

Query: 622 AFTIMIVYVW 651
              I ++YVW
Sbjct: 123 PMVISVLYVW 132


>AF002196-3|AAP68957.1|  916|Caenorhabditis elegans Hypothetical
           protein C09D4.4c protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 490 YRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWS 654
           ++  R +E+ SFR  + DF   F++   L   C  F N+L +G     ++ Y+ S
Sbjct: 778 WKKSRSMEQLSFRD-SVDFASSFVYKTSLNNACGKFKNILLVGTPHDQLVPYMSS 831


>AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical
           protein C09D4.4b protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 490 YRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWS 654
           ++  R +E+ SFR  + DF   F++   L   C  F N+L +G     ++ Y+ S
Sbjct: 777 WKKSRSMEQLSFRD-SVDFASSFVYKTSLNNACGKFKNILLVGTPHDQLVPYMSS 830


>AF002196-1|AAP68955.1|  913|Caenorhabditis elegans Hypothetical
           protein C09D4.4a protein.
          Length = 913

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 490 YRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWS 654
           ++  R +E+ SFR  + DF   F++   L   C  F N+L +G     ++ Y+ S
Sbjct: 775 WKKSRSMEQLSFRD-SVDFASSFVYKTSLNNACGKFKNILLVGTPHDQLVPYMSS 828


>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical
           protein C16A3.3 protein.
          Length = 1743

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 581 IINKPPNMNMTTKSAVLDLKEPSSSILQYLYVNITLKKKLNPRFP 447
           I ++  N+ +T + ++L LK PS + +Q L + +T+   +   FP
Sbjct: 488 ICDERKNLIVTCRESILGLKSPSVNSVQELEIGVTVPCVIRKVFP 532


>Z92806-2|CAB07257.1|  303|Caenorhabditis elegans Hypothetical
           protein K10G4.2 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 358 LVSPFQLYFNPNLILRKYQLW 420
           L+SPF L+F+ ++ +RK  +W
Sbjct: 99  LISPFMLFFHYHITIRKNSVW 119


>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 158 WPNNVEPRHFFNLVISFVF 214
           W  +++P HF NL+  F F
Sbjct: 95  WSASIQPNHFLNLIFFFTF 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,159,836
Number of Sequences: 27780
Number of extensions: 292716
Number of successful extensions: 718
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)