Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6m17
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 32 0.049
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 32 0.065
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 31 0.15
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 31 0.15
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 29 0.34
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.34
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 29 0.46
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 28 1.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 1.8
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 27 2.4
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 26 3.2
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 3.2
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 4.2
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 26 4.2
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 26 4.2
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 26 4.2
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 7.4
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.4
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 25 9.8
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 25 9.8
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 25 9.8
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 25 9.8
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 32.3 bits (70), Expect = 0.049
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 154 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKK 312
K +TV+GGG++G + V ++ G VT+V+ I LSR+ K
Sbjct: 218 KKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISK 270
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 31.9 bits (69), Expect = 0.065
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 157 NVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKS 279
+V +IGGG G+G+A ++ G NV L++ ++ A + KS
Sbjct: 69 DVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKS 109
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 30.7 bits (66), Expect = 0.15
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = +1
Query: 121 FSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSR 300
F S NV V+G G + + Q + AG NVT+ S++ L AKK T+
Sbjct: 156 FGSKEHQVKPGNNVLVLGTGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTIN 215
Query: 301 VAKKMYKDNPQ 333
YK PQ
Sbjct: 216 -----YKKTPQ 221
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 30.7 bits (66), Expect = 0.15
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 154 KNVTVIGGGL-MGSGIAQVSAQAGQNVTLVDVSNDALAKAKK 276
KN V G +G IA AQAG NV + ++ D KAKK
Sbjct: 22 KNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKK 63
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 29.5 bits (63), Expect = 0.34
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 154 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAK 267
KNV VIGGG G A +++ G TL+ S D + +
Sbjct: 17 KNVVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQ 54
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.34
Identities = 23/103 (22%), Positives = 49/103 (47%)
Frame = +1
Query: 232 TLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSA 411
TL D +ND K K +N S + K+ D+ ++ + + + L + + +A SK
Sbjct: 655 TLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRK---SEEALRFSKLE 711
Query: 412 DLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEI 540
+ +++N++ KH+ + S A NT+++ +E+
Sbjct: 712 AKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTNAILSSEL 754
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 29.1 bits (62), Expect = 0.46
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 109 IVRNFSSSSAM--QSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSI 282
I+RNF SSA+ QS++ NV V GG + ++ A L +V D K K
Sbjct: 581 IIRNFQFSSALKRQSSVSNVRVSGGSFK-TFVSVKGAPEVIATMLREVPKD-YEKIYKDY 638
Query: 283 GTNLSRVAKKMYK 321
G SRV YK
Sbjct: 639 GRKGSRVLALGYK 651
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 166 VIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALA--KAKKSIGTNLSRVAKKMYKDNPQEG 339
VIGGGL G G NV L+D N A K + G N + + +
Sbjct: 43 VIGGGLAGLSATNTILDLGGNVLLLD-KNTAFGGNSVKAASGINAAPTQLQFDQHVSDSV 101
Query: 340 EKFVNDSL 363
F NDS+
Sbjct: 102 NTFYNDSI 109
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 123 FKFLCNAKCYQECNGYWRWSNGL 191
F F+CNA Y N Y W+ L
Sbjct: 619 FYFVCNATSYSSLNPYGNWARPL 641
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.6 bits (56), Expect = 2.4
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +1
Query: 229 VTLVDVSNDALAKA--KKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEAS 402
+T V + LA+A K I + + K K P+E E F+ L N + E
Sbjct: 861 ITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKG 920
Query: 403 KSADLVVEAIVENIEVKHKLFKQL 474
+ D + I+ + + +LFKQ+
Sbjct: 921 ELDDDELNEILARGDDELRLFKQM 944
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 247 SNDALAK---AKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADL 417
S DA+ K A K+ NL +V+ D P+ F ND + + +T A +K AD
Sbjct: 254 STDAVPKKLDASKASSLNLEKVS--YLTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDADT 311
Query: 418 VVEAIVENIE 447
+ + +E
Sbjct: 312 LRTILKAKLE 321
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 111 RKKFFKFLCNAKCY 152
RK+FF FL N +CY
Sbjct: 629 RKRFFDFLVNTQCY 642
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 142 QSAIKNVTVI--GGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIG 285
QS ++ +I GGG++G + V+A + + + + LA SIG
Sbjct: 101 QSCTRDTILIAMGGGVIGDLVGYVAASFMRGIRFIQMPTTLLAMVDSSIG 150
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 358 SLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPS 492
SLG +++A D SAD + E + + + H L K L A S
Sbjct: 430 SLGLVSSALDKITGLLSADNLSETVSQARDFSHTLSKSLKSRAKS 474
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +1
Query: 292 LSRVAKKMYKDNPQEGEKFV--NDSLGRINTATDAA--EASKSAD 414
+S++A+ NP + E+FV D+LG D+ EAS AD
Sbjct: 102 ISKIAEAAQASNPDDEEEFVMEEDNLGEAPLLVDSESYEASVKAD 146
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 187 GSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRV 303
GS + + A + +SND+LAKA S+ T++S++
Sbjct: 317 GSFTTHLDSNASMAKSFSQISNDSLAKA-SSVATSMSQM 354
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 267 SQEEHWHKPQQGRKEDVQR*SPRRREICE 353
+QE+ W K +Q KE+++R RREI E
Sbjct: 19 NQEKVW-KDEQAHKEEMKRVEQLRREIEE 46
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +1
Query: 241 DVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLV 420
++SN + + S+G + + + Y + ++V DS+ R++ A + +D +
Sbjct: 365 EISNLRVLAVENSLGNLIQKAEESNYDQAIMDLFEYVKDSILRVHER--AIKLRTLSDSI 422
Query: 421 VEAIVENIEV 450
+ ENIE+
Sbjct: 423 RADVAENIEM 432
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 9.8
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Frame = +1
Query: 181 LMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIG-----TNLSRVAKKMYKDNPQEGEK 345
+ G +Q+S Q G + + D S+ K K+++ T L+ + + + P E
Sbjct: 1 MSGRRYSQISQQEGSSSS--DDSDSQQKKTKRTVAHRSPNTTLNGMPRVDSRARPNENSG 58
Query: 346 FVNDSLGRINTATDAAEASKSADLVVEAIVENIEVK 453
S GR++T K ++LV + ++ EV+
Sbjct: 59 QSKSSNGRVDTDRKMDLLRKRSNLVHQTLLLEKEVR 94
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 163 TVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKK 276
T I GGL G+G+AQ++ A N++ + +D +K
Sbjct: 63 TSIIGGLAGNGVAQITTLA-YNLSAIRQRDDGFEILRK 99
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 350 TNFSPSWGLSLYIFF 306
T+ PS+GL LY+FF
Sbjct: 336 TDHGPSYGLYLYLFF 350
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 551 TTDA-ISFIDREDVFDAKIV*LGATPSSCLNNLC 453
T DA ++F+DR VFD +I L + LN C
Sbjct: 371 TVDAELAFVDRSFVFDLEIKKLFVQTLTPLNETC 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,690
Number of Sequences: 5004
Number of extensions: 38922
Number of successful extensions: 115
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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