Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6m16
(664 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 22 4.5
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 22 4.5
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 22 4.5
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 22 4.5
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 22 4.5
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 22 4.5
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 22 4.5
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 22 4.5
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 22 4.5
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 4.5
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 4.5
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 21 7.9
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 7.9
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 528 KICLLVLTLGYIHISVSIICNA 593
++CL+V TL + ++ I+C A
Sbjct: 434 RLCLIVFTLFTVLATIVILCRA 455
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 528 KICLLVLTLGYIHISVSIICNA 593
++CL+V TL + ++ I+C A
Sbjct: 434 RLCLIVFTLFTVLATIVILCRA 455
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 528 KICLLVLTLGYIHISVSIICNA 593
++CL+V TL + ++ I+C A
Sbjct: 434 RLCLIVFTLFTVLATIVILCRA 455
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 528 KICLLVLTLGYIHISVSIICNA 593
++CL+V TL + ++ I+C A
Sbjct: 434 RLCLIVFTLFTVLATIVILCRA 455
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 528 KICLLVLTLGYIHISVSIICNA 593
++CL+V TL + ++ I+C A
Sbjct: 434 RLCLIVFTLFTVLATIVILCRA 455
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 528 KICLLVLTLGYIHISVSIICNA 593
++CL+V TL + ++ I+C A
Sbjct: 434 RLCLIVFTLFTVLATIVILCRA 455
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 528 KICLLVLTLGYIHISVSIICNA 593
++CL+V TL + ++ I+C A
Sbjct: 502 RLCLIVFTLFTVLATIVILCRA 523
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 528 KICLLVLTLGYIHISVSIICNA 593
++CL+V TL + ++ I+C A
Sbjct: 502 RLCLIVFTLFTVLATIVILCRA 523
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 332 NNYNKHNYNKLYYNINYIE 350
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 56 NNSIKHRHANLYYAPKYFE 112
NN KH + LYY Y E
Sbjct: 332 NNYNKHNYNKLYYNINYIE 350
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 21.4 bits (43), Expect = 7.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -3
Query: 641 LNWMPYFTIY 612
L W+P+FT+Y
Sbjct: 20 LCWLPFFTMY 29
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.4 bits (43), Expect = 7.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -3
Query: 641 LNWMPYFTIY 612
L W+P+FT+Y
Sbjct: 468 LCWLPFFTMY 477
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,736
Number of Sequences: 438
Number of extensions: 3372
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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