Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6m12
         (210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   0.45 
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   0.78 
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   1.8  
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   1.8  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   3.2  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    22   9.6  

>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 196 LLMFIDYDIYILIVFLVFSVCEGSLGLSILVSIIRSHGN---DYFQRFRIL 53
           +  F+   +  LI+ +   +  G +G+SI+  +I  +GN   DYF   R+L
Sbjct: 119 IAFFVLIGLTCLILLITMILEPGLIGISIMKRLIGDNGNDERDYFVENRLL 169


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 187  FIDYDIYILIVFLVFSVCEGSLGLSILVSIIRSHGNDYFQRF 62
            +IDY I  L+  L F+   GS  LS ++ +  +   +Y+++F
Sbjct: 1711 YIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKF 1752


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 163 LIVFLVFSVCEGSLGLSILVSII 95
           +  FLVFS CE  +G S+   +I
Sbjct: 1   MFFFLVFSACEVFVGFSLCTLVI 23


>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 202 LVLLMFIDYDIYILIVFLVFSV 137
           + L  F+ YD+ IL + L+FS+
Sbjct: 1   MALHYFLQYDVQILCIALMFSI 22


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 154 FLVFSVCEGSLGLSILVSIIRSHGND 77
           F++F+ C   + LSI    IR+ GND
Sbjct: 262 FMLFAWCIYGILLSIFFKEIRADGND 287


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 178 YDIYILIVFLVFSVCEGSLGLSILVSIIRS 89
           +DIYI  +  V +VC     L+I+ +I+ +
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVET 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,594
Number of Sequences: 5004
Number of extensions: 4345
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)