Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6m09
         (302 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0629 - 21360831-21361310,21361391-21361663,21362212-213624...    26   4.9  
08_02_0337 - 15903990-15904249,15904318-15904441                       26   4.9  
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888     26   4.9  
05_04_0258 + 19490256-19491569                                         26   6.5  
05_01_0493 + 4113869-4116728,4116859-4117370                           26   6.5  

>12_02_0629 -
           21360831-21361310,21361391-21361663,21362212-21362488,
           21362590-21362735,21363207-21363416
          Length = 461

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 134 ATDAPEAGSHPSAGVA-EHSPRLQ*GRVGSRHALCIPP 24
           A  AP   +  +AGVA  H PR    R+  RH   +PP
Sbjct: 32  AAAAPGLDAVAAAGVAGAHGPRRAGARLRERHGAPLPP 69


>08_02_0337 - 15903990-15904249,15904318-15904441
          Length = 127

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 76  RGCSKEESGPDTPSVYLL 23
           RGC +EE G ++PS+ LL
Sbjct: 108 RGCMREEPGGNSPSLVLL 125


>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
          Length = 213

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +1

Query: 13  CTKVGGIQRACLDPTLPYCNLGECSATPAEGCEPASGASVAP 138
           CT  GG    C  P +P C  G CS +    C    GAS  P
Sbjct: 137 CTYCGGHGGGCNKPAVPPC-AGGCSISDGGAC----GASCKP 173


>05_04_0258 + 19490256-19491569
          Length = 437

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 16  TKVGGIQRACLDPTLPYCNLGECSATP 96
           TK GG   +C     P C  G CS  P
Sbjct: 98  TKTGGCFNSCFGAPSPACLNGTCSGFP 124


>05_01_0493 + 4113869-4116728,4116859-4117370
          Length = 1123

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 38  GRVWTRLFLTATSENAPLPPLKDVNRPLVHL 130
           GR  TRL LT  +   P+PP       L HL
Sbjct: 98  GRTLTRLVLTGANLTGPIPPELGELPALAHL 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,848,767
Number of Sequences: 37544
Number of extensions: 114756
Number of successful extensions: 338
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)