Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6m03
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0238 + 21186072-21186883,21187315-21189346                       29   2.2  
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377...    28   6.7  
02_05_1334 - 35765973-35766068,35766272-35766353,35766448-357664...    28   6.7  
07_03_1491 + 26953193-26954326                                         27   8.8  
03_04_0239 + 19227636-19228029,19228117-19228274                       27   8.8  

>02_04_0238 + 21186072-21186883,21187315-21189346
          Length = 947

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -3

Query: 534 SITTFDQFNRVSWVESL*SYLTINSVSIRREINIVNQNLVFFCGRLVESADRLVYINGGA 355
           SIT+  + +R+S +  L   ++  S  +  ++   N NLV   GRL   + R +YI G  
Sbjct: 678 SITSLQELSRLSNLRVL--VMSWRSFGMIGDVRSYNNNLVSSLGRLGTCSLRSIYIQGYN 735

Query: 354 TCYTDF 337
           +   DF
Sbjct: 736 SSLQDF 741


>12_02_0405 -
           18635503-18635871,18636703-18636817,18636970-18637721,
           18638540-18638542
          Length = 412

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/90 (25%), Positives = 40/90 (44%)
 Frame = +1

Query: 304 IMAPLVGADPDEISITGCTTINIHQTISTFYKPTAEKYKILVDDINFPTDRYAVDGQIRL 483
           ++ P+ G   + + +    T     TIS  Y PT  KYKI    ++FP++   VD  + L
Sbjct: 156 VINPVTG---ESLHVPSLPTATRAGTISFGYHPTTGKYKI----VHFPSNGGLVD-DVTL 207

Query: 484 KGLNPRDAVKLVKSRDGKFMSEDDIIEAMT 573
                  +     SR G+    D +++ +T
Sbjct: 208 GDSAAASSSSSSPSRHGRGGHGDGVVDVLT 237


>02_05_1334 -
           35765973-35766068,35766272-35766353,35766448-35766485,
           35766601-35766657,35766795-35766858,35766947-35767043,
           35767604-35767656,35767837-35767921,35768649-35769675
          Length = 532

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 472 QIRLKGLNPRD----AVKLVKSRDGKFMSEDDIIEAMTEDVAIILLP 600
           Q RL  +N  D    AV + KSRD K   E++++E + + +  +L+P
Sbjct: 234 QKRLGNINGVDGLLQAVAMYKSRDPKTSDEEEMLENLFDCLCCVLMP 280


>07_03_1491 + 26953193-26954326
          Length = 377

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 108 VVIVQKFWKFWSVLILVHIIKLITYVNAMFLKF 10
           VV+V    K WSV +  H++    Y +A F K+
Sbjct: 197 VVVVDDVRKLWSVDLAGHVVAAPEYCHANFTKY 229


>03_04_0239 + 19227636-19228029,19228117-19228274
          Length = 183

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 348 YTDFVRICSD*GCHDVSQEFGVQEVFSL 265
           +T   ++CS   CHD+ +EF + ++F L
Sbjct: 77  FTLLRKVCSRLSCHDLVEEFCMLQIFPL 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,261,628
Number of Sequences: 37544
Number of extensions: 332511
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)