Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6m03
         (608 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003486-1|AAO39489.1|  414|Drosophila melanogaster SD17309p pro...    34   0.13 
AY075228-1|AAL68095.1|  511|Drosophila melanogaster AT18160p pro...    29   3.8  
AE013599-3043|AAM68392.1|  511|Drosophila melanogaster CG9945-PB...    29   3.8  
AE013599-3042|AAF57446.2|  511|Drosophila melanogaster CG9945-PA...    29   3.8  
AE014134-2240|AAF53222.3| 1334|Drosophila melanogaster CG5792-PB...    29   6.6  

>BT003486-1|AAO39489.1|  414|Drosophila melanogaster SD17309p
           protein.
          Length = 414

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
 Frame = +1

Query: 82  FPKFLDNNDQLGHFRQRFYIKQGTIYMCGNSLGLACKDAEETLYEVLNKWK---DEGIKM 252
           FP+ L  N+++       Y K G   + G+S  + C   +E L      WK   DE   M
Sbjct: 29  FPRILSKNNKI-------YTKLGEFCLSGDSFWIVCHTCQEELQTQDQFWKHIQDEHNFM 81

Query: 253 WNVDQGKYFLYSEFLADIMAPLVGADPDEISITGCTTINIHQTIST 390
             V +      S  L D+ A    A P   S  G T I++   + T
Sbjct: 82  HGVAKEHSRTSSYCLTDVEAAAAAATPGSSSQQGATAISVPLALYT 127


>AY075228-1|AAL68095.1|  511|Drosophila melanogaster AT18160p
           protein.
          Length = 511

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 121 FRQRFYIKQGTIYMCGNSLGLACKDAEETLYEVLNKWKDEGIKMWNVDQ 267
           FR R   K    ++ G+  G+   D+    Y VL+  KD+ IK+W++ Q
Sbjct: 301 FRSRDLSKSVASFI-GHYDGITYIDSRNDGYHVLSNSKDQSIKIWDIRQ 348


>AE013599-3043|AAM68392.1|  511|Drosophila melanogaster CG9945-PB,
           isoform B protein.
          Length = 511

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 121 FRQRFYIKQGTIYMCGNSLGLACKDAEETLYEVLNKWKDEGIKMWNVDQ 267
           FR R   K    ++ G+  G+   D+    Y VL+  KD+ IK+W++ Q
Sbjct: 301 FRSRDLSKSVASFI-GHYDGITYIDSRNDGYHVLSNSKDQSIKIWDIRQ 348


>AE013599-3042|AAF57446.2|  511|Drosophila melanogaster CG9945-PA,
           isoform A protein.
          Length = 511

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 121 FRQRFYIKQGTIYMCGNSLGLACKDAEETLYEVLNKWKDEGIKMWNVDQ 267
           FR R   K    ++ G+  G+   D+    Y VL+  KD+ IK+W++ Q
Sbjct: 301 FRSRDLSKSVASFI-GHYDGITYIDSRNDGYHVLSNSKDQSIKIWDIRQ 348


>AE014134-2240|AAF53222.3| 1334|Drosophila melanogaster CG5792-PB,
            isoform B protein.
          Length = 1334

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
 Frame = +1

Query: 196  AEETLYEVLNKWKDEGIKMWNVDQG-KYFLYSEFLADIMAPLVGADPDEISITGCTTINI 372
            +++ +  +  +WK   +K +  +   K+F+     A++ AP    + + I I   TT   
Sbjct: 1047 SDKEIQSIAREWKRICVKSFKTNSDEKFFINVCQAAEVPAPQDVTEEELIGILESTT--- 1103

Query: 373  HQTISTFYKPTAEKYKILVDDINFPTDRYAVDGQIRLKGLNPRDAVKLVKSRDGKFMSED 552
                     P + +  + + D  F  DR      +    +NP+  VK+ KS+  K     
Sbjct: 1104 ---------PGSYRVPMSISDPRFTKDRSDKTVDVCDIAINPKFLVKIQKSQLFKNFFMQ 1154

Query: 553  DIIEAMTE 576
             +IEAM+E
Sbjct: 1155 IVIEAMSE 1162


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,348,907
Number of Sequences: 53049
Number of extensions: 576222
Number of successful extensions: 1494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)